Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq46 102 5e-17 seq22 95.1 8e-15 >seq46 Length=1090308 Score = 102 bits (112), Expect = 5e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--T 34536 ||| || | |||||| | ||||| || |||||||| ||||| || ||||| || || | Sbjct 104072 GCCACCACGAAGACGGAGGACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 104131 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||| || | || || || || || || || || || | ||||||||||||||| Sbjct 104132 CAAAGTA--CGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGT 104189 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTC 34655 || | ||||||||||| |||| || | || ||| | ||| || || | || Sbjct 104190 GGGATACCCTCCTTGTCCTGGATC-TTAGACTTGACGTTGTCAATGGTATCCGAGGATTC 104248 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||| || || || || || || || || ||||| ||||||||||| Sbjct 104249 CACTTCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 104299 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTGAAAGTGTTC 34546 ||||| | ||||| |||||||||||||||||||| ||||| || | || ||| |||| Sbjct 104310 AGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAA--GTTC 104367 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || || || || || || || || || | ||||||||||||||| || | |||| Sbjct 104368 GTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCT 104427 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 |||| ||| ||| || | || ||| | || ||||| ||| ||||||| | Sbjct 104428 CCTTATCT-TGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCAAG 104486 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || | || || || || || ||||| Sbjct 104487 GTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| || ||||| ||||| || || || || ||||| Sbjct 104538 AGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGG 104597 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || ||||| || | ||||||||||||||| || | ||||||| Sbjct 104598 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCC 104657 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 ||||| ||| || | || ||| | ||| |||||| || | || || || | || Sbjct 104658 TTGTC-CTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGAT-TCGACCTCAAGGG 104715 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | || || |||||||| ||||| Sbjct 104716 TGATGGTCTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||| || || |||||| || |||||||| || ||| Sbjct 104757 CCGCCACGAAGACGGAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAA 104816 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| || || || || || || || || | ||||||||| ||||| || Sbjct 104817 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGG 104876 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 104877 ATGCCCTCCTTGTCTTGGATCTT 104899 >seq22 Length=1308897 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| |||||| || ||||| || || || || || || | || ||||| || Sbjct 1149369 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCCTCAAGCTG 1149310 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || |||||||| || || |||||||||||||| || | |||||||||||| |||| | Sbjct 1149309 CTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATC-T 1149251 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || || | || ||||| |||||| || | ||| || || || || | Sbjct 1149250 TGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCG 1149191 Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707 | | || ||||| || ||||||||| Sbjct 1149190 TGAGGGTCTTCACGAAGATCTGCATG 1149165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727451970480