Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq46 102 5e-17
seq22 95.1 8e-15
>seq46
Length=1090308
Score = 102 bits (112), Expect = 5e-17
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--T 34536
||| || | |||||| | ||||| || |||||||| ||||| || ||||| || || |
Sbjct 104072 GCCACCACGAAGACGGAGGACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 104131
Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
||||| || | || || || || || || || || || | |||||||||||||||
Sbjct 104132 CAAAGTA--CGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGT 104189
Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTC 34655
|| | ||||||||||| |||| || | || ||| | ||| || || | ||
Sbjct 104190 GGGATACCCTCCTTGTCCTGGATC-TTAGACTTGACGTTGTCAATGGTATCCGAGGATTC 104248
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||||| || || || || || || || || ||||| |||||||||||
Sbjct 104249 CACTTCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 104299
Score = 98.7 bits (108), Expect = 6e-16
Identities = 157/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTGAAAGTGTTC 34546
||||| | ||||| |||||||||||||||||||| ||||| || | || ||| ||||
Sbjct 104310 AGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAA--GTTC 104367
Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606
| | || || || || || || || || || | ||||||||||||||| || | ||||
Sbjct 104368 GTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCT 104427
Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665
|||| ||| ||| || | || ||| | || ||||| ||| ||||||| |
Sbjct 104428 CCTTATCT-TGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCAAG 104486
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| || | || || || || || |||||
Sbjct 104487 GTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527
Score = 98.7 bits (108), Expect = 6e-16
Identities = 157/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || ||||| || ||||| ||||| || || || || |||||
Sbjct 104538 AGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGG 104597
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || || ||||| || | ||||||||||||||| || | |||||||
Sbjct 104598 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCC 104657
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666
||||| ||| || | || ||| | ||| |||||| || | || || || | ||
Sbjct 104658 TTGTC-CTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGAT-TCGACCTCAAGGG 104715
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || | || || |||||||| |||||
Sbjct 104716 TGATGGTCTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755
Score = 96.9 bits (106), Expect = 2e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | || | ||| || || |||||| || |||||||| || |||
Sbjct 104757 CCGCCACGAAGACGGAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAA 104816
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| |||| || || || || || || || || | ||||||||| ||||| ||
Sbjct 104817 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGG 104876
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| ||||||
Sbjct 104877 ATGCCCTCCTTGTCTTGGATCTT 104899
>seq22
Length=1308897
Score = 95.1 bits (104), Expect = 8e-15
Identities = 146/206 (71%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
||| || ||| |||||| || ||||| || || || || || || | || ||||| ||
Sbjct 1149369 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCCTCAAGCTG 1149310
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|| |||||||| || || |||||||||||||| || | |||||||||||| |||| |
Sbjct 1149309 CTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATC-T 1149251
Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
| | || || | || ||||| |||||| || | ||| || || || || |
Sbjct 1149250 TGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCG 1149191
Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707
| | || ||||| || |||||||||
Sbjct 1149190 TGAGGGTCTTCACGAAGATCTGCATG 1149165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727451970480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |