Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq46 179 9e-40
seq22 176 1e-38
seq39 125 2e-23
seq73 87.8 4e-12
>seq46
Length=1090308
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||||||||| || |||||||||||||| || || | || || | |||||
Sbjct 104544 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCC 104603
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || |||||||| ||||||| ||| |||||||||
Sbjct 104604 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCC 104663
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| || |||||||| || ||| ||||| || ||||| |||
Sbjct 104664 TGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTC 104723
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||||||||| ||||| | |||||
Sbjct 104724 TTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755
Score = 163 bits (180), Expect = 7e-35
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | |||||||| ||||| || ||||| || ||||||||||| || | ||||||
Sbjct 104762 ACGAAGACGGAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGT 104821
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| |||||||| || || ||||| || || || | ||
Sbjct 104822 TCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCC 104881
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| |||||||| || ||||| ||||||||||| ||| || ||||| ||
Sbjct 104882 CTCCTTGTCTTGGATCTTGCTCTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAG 104941
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
|||||| ||||| || ||||
Sbjct 104942 AGTGATGGTCTTGCCGGTGA 104961
Score = 143 bits (158), Expect = 6e-29
Identities = 167/223 (75%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||| | ||||| | ||| |||||| || || |||||||| || || | ||| |
Sbjct 104078 ACGAAGACGGAGGACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAAAG- 104136
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | ||||| || ||||||||||| ||||| || || || |||||||| || || | |
Sbjct 104137 TACGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATAC 104196
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||||||||||||||| || ||||| || ||||| || ||| ||| || || |
Sbjct 104197 CCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCAATGGTATCCGAGGATTCCACTTCCA 104256
Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||| |||||||| || | ||||| || || | ||||||
Sbjct 104257 GAGTGATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 104299
Score = 134 bits (148), Expect = 3e-26
Identities = 159/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961
|| || | ||| |||||| ||| ||||||||||| || || | ||| || | ||||||
Sbjct 104316 AGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAA-AGTTCGTCCATC 104374
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| ||||||||||| ||||| || || || |||||||| || || | || ||||| ||
Sbjct 104375 CTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATC 104434
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
|| ||||| |||||||| ||||||||||| || ||||| || | || || ||
Sbjct 104435 TTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGT 104494
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || ||||||||||| || || | |||||
Sbjct 104495 CTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527
>seq22
Length=1308897
Score = 176 bits (194), Expect = 1e-38
Identities = 166/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || ||||| |||||||| || |||||||| || || | ||||| | |||||
Sbjct 1149377 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCC 1149318
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| | ||| |||||||| ||||| | ||| |||||||||
Sbjct 1149317 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCC 1149258
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 1149257 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 1149198
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 1149197 TTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 1149166
>seq39
Length=1363582
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| ||||| || || || | ||||| | ||||| || || ||||| || ||||||||
Sbjct 689496 TTCTGGATATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATC 689555
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || |||||||| ||||||| ||||||||| ||||||||||| || || || |||
Sbjct 689556 AATCGCTGTTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCG 689615
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
||||| || || || ||||| || ||||| ||||| ||||| || ||||| || ||
Sbjct 689616 ATGGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAA 689674
>seq73
Length=484926
Score = 87.8 bits (96), Expect = 4e-12
Identities = 190/283 (67%), Gaps = 6/283 (2%)
Strand=Plus/Minus
Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGG 178142
|||| | |||||| ||||||||||| | |||| ||||| ||||| ||||| |
Sbjct 51338 TTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAC---GCATCCTTGTAGAGCATGAATG 51282
Query 178143 GCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202
| |||| ||| | ||| || | || ||| || ||| |||| || || || |
Sbjct 51281 GGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAATACCAGAGCTTTTGAGCCTTTACGG 51222
Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262
||||| | | || || || ||| ||||| | ||| | | || || || ||| |
Sbjct 51221 TCTTTCGGCCCTTGCCCTCGCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGT 51162
Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322
||||||| | ||||| ||| |||||| || || | || |||||| |||| || ||
Sbjct 51161 AGACATCTGCTAGACCAGGACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCT 51102
Query 178323 TCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|| | ||||||||||| || | |||| | |||||||||
Sbjct 51101 CAACCCTCTTCATGAAGAGATCGGGAATCCACAAGGCATAGAA 51059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159143683084400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |