Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq46 179 9e-40 seq22 176 1e-38 seq39 125 2e-23 seq73 87.8 4e-12 >seq46 Length=1090308 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| || |||||||||||||| || || | || || | ||||| Sbjct 104544 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCC 104603 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || |||||||| ||||||| ||| ||||||||| Sbjct 104604 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCC 104663 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || |||||||| || ||| ||||| || ||||| ||| Sbjct 104664 TGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTC 104723 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| ||||| | ||||| Sbjct 104724 TTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||| ||||| || ||||| || ||||||||||| || | |||||| Sbjct 104762 ACGAAGACGGAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGT 104821 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| || || ||||| || || || | || Sbjct 104822 TCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCC 104881 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| || ||||| ||||||||||| ||| || ||||| || Sbjct 104882 CTCCTTGTCTTGGATCTTGCTCTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAG 104941 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 |||||| ||||| || |||| Sbjct 104942 AGTGATGGTCTTGCCGGTGA 104961 Score = 143 bits (158), Expect = 6e-29 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| | ||| |||||| || || |||||||| || || | ||| | Sbjct 104078 ACGAAGACGGAGGACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAAAG- 104136 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||||| || ||||||||||| ||||| || || || |||||||| || || | | Sbjct 104137 TACGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATAC 104196 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||||||||||||||| || ||||| || ||||| || ||| ||| || || | Sbjct 104197 CCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCAATGGTATCCGAGGATTCCACTTCCA 104256 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||| |||||||| || | ||||| || || | |||||| Sbjct 104257 GAGTGATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 104299 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | ||| |||||| ||| ||||||||||| || || | ||| || | |||||| Sbjct 104316 AGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAA-AGTTCGTCCATC 104374 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| ||||| || || || |||||||| || || | || ||||| || Sbjct 104375 CTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATC 104434 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 || ||||| |||||||| ||||||||||| || ||||| || | || || || Sbjct 104435 TTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGT 104494 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||||||||| || || | ||||| Sbjct 104495 CTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527 >seq22 Length=1308897 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| |||||||| || |||||||| || || | ||||| | ||||| Sbjct 1149377 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCC 1149318 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | ||| |||||||| ||||| | ||| ||||||||| Sbjct 1149317 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCC 1149258 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 1149257 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 1149198 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 1149197 TTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 1149166 >seq39 Length=1363582 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || ||||| || || || | ||||| | ||||| || || ||||| || |||||||| Sbjct 689496 TTCTGGATATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATC 689555 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || |||||||| ||||||| ||||||||| ||||||||||| || || || ||| Sbjct 689556 AATCGCTGTTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCG 689615 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 689616 ATGGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAA 689674 >seq73 Length=484926 Score = 87.8 bits (96), Expect = 4e-12 Identities = 190/283 (67%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGG 178142 |||| | |||||| ||||||||||| | |||| ||||| ||||| ||||| | Sbjct 51338 TTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAC---GCATCCTTGTAGAGCATGAATG 51282 Query 178143 GCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202 | |||| ||| | ||| || | || ||| || ||| |||| || || || | Sbjct 51281 GGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAATACCAGAGCTTTTGAGCCTTTACGG 51222 Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262 ||||| | | || || || ||| ||||| | ||| | | || || || ||| | Sbjct 51221 TCTTTCGGCCCTTGCCCTCGCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGT 51162 Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322 ||||||| | ||||| ||| |||||| || || | || |||||| |||| || || Sbjct 51161 AGACATCTGCTAGACCAGGACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCT 51102 Query 178323 TCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || | ||||||||||| || | |||| | ||||||||| Sbjct 51101 CAACCCTCTTCATGAAGAGATCGGGAATCCACAAGGCATAGAA 51059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143683084400