Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq46 98.7 7e-16 seq22 93.3 3e-14 >seq46 Length=1090308 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || ||||| || |||||||| ||||| || ||| || Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| || ||| | || || || ||| Sbjct 104239 GATACCATTGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 104180 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || || | || ||||| |||| |||||| Sbjct 104179 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAAC 104120 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||| |||| || || Sbjct 104119 ATCCAGAAGGAAAGCACTCTACACTTGGT 104091 >seq22 Length=1308897 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATCCCTCCGGACCA 1149284 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || ||||||||||| || || || || | || || | ||| ||||| Sbjct 1149285 ACAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAA 1149344 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1149345 CATCCAGAAGGAGTCCAC 1149362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007293084480