Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq24 116 5e-21 >seq24 Length=853129 Score = 116 bits (128), Expect = 5e-21 Identities = 575/910 (63%), Gaps = 79/910 (9%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| ||||| || || ||||| || || || || || || | | ||| ||||| Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200 Query 46399 TCCATAAAATCAAACGGATTAG-TAACATTATAA-Attttt--ttAAATCCTAATTCTGA 46454 ||||| || || || || || | | || || || |||| | ||| || | | | Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAGTATTTCTCGTTA---CCAAGAGCCGT 483256 Query 46455 AATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTAT 46514 | |||| ||| || ||||| || ||||| ||||| | | | ||||| || Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCC--- 483313 Query 46515 GAGTTTGACC---GGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGA 46571 |||| | | || |||||||| || | || ||||| ||||| | ||||| || | Sbjct 483314 GAGTAAGGCACAGGGGAGAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGT 483373 Query 46572 TAT--TATCGATGTTA--CTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTA 46627 || |||| | | |||||| || ||| | ||| |||| || ||| | | Sbjct 483374 GATGATATCCTGGACAGCCTGTTTGCT----TGGGCGGTGCTTCAAGTGAGAAAATAGAA 483429 Query 46628 AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 46687 |||||||| || ||| ||||| || || | | || | ||||| ||||| || | Sbjct 483430 GGCATGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCA 483489 Query 46688 GCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGA 46747 | |||| ||| || |||||||| || |||||||| ||||| || ||||| ||| |||| Sbjct 483490 GACCAGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGA 483549 Query 46748 ATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT--- 46804 | |||||||| || || |||||||| || | | | || | ||| | || | Sbjct 483550 AAATGCCTTCCACGGCAGCGAATGCAACCAAACGTTGGGCGAAGGTGGACTTCTTGTCTT 483609 Query 46805 GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCA-TTGTTTCTA---TA 46860 ||||||| || |||||||| ||||| ||||| | || || | || ||||| || Sbjct 483610 GAATCCATCTAACTGCCCAATCGGCCTTCTTCTTGATGCAGGGGACTTAATTCTAGGTTA 483669 Query 46861 GCAT--TAAAG--------AGAAAGtttttt-----tC--ATCACTA------------- 46890 ||| ||| | ||| || | | | || |||| || Sbjct 483670 GCACCATAACGGCCATTCAAGACAGATATATCTTACTCGTATCAATAGCATTGAACAAAT 483729 Query 46891 -----------------TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 || || ||||| || || || | || || | ||||| | Sbjct 483730 ACGTCCGTTGTGCTGGCTCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGT 483789 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 | ||||| || || ||||| || || || ||||| | || |||| |||||| || | Sbjct 483790 GGATGTTCTCCATCATGATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTT 483849 Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 | || || || ||| ||| ||||| || || || ||||| || || || || | Sbjct 483850 CACCACTGAAACGCTCAACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACG 483909 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCCAGTCATTGA 47110 | | || || | ||| || ||||| | | ||| ||||||||||| | || Sbjct 483910 CGAGAACGTGAGACACAAAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGA 483969 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 ||| || || | ||| | |||||| || |||||||| || |||||||| || ||||||| Sbjct 483970 GATCCTTGGAAAGATCAATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACA 484029 Query 47171 TATTCCATAT 47180 | | ||| || Sbjct 484030 TCTGCCAGAT 484039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929409459200