Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq24 116 5e-21
>seq24
Length=853129
Score = 116 bits (128), Expect = 5e-21
Identities = 575/910 (63%), Gaps = 79/910 (9%)
Strand=Plus/Plus
Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398
|| ||||| ||||| || || ||||| || || || || || || | | ||| |||||
Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200
Query 46399 TCCATAAAATCAAACGGATTAG-TAACATTATAA-Attttt--ttAAATCCTAATTCTGA 46454
||||| || || || || || | | || || || |||| | ||| || | | |
Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAGTATTTCTCGTTA---CCAAGAGCCGT 483256
Query 46455 AATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTAT 46514
| |||| ||| || ||||| || ||||| ||||| | | | ||||| ||
Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCC--- 483313
Query 46515 GAGTTTGACC---GGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGA 46571
|||| | | || |||||||| || | || ||||| ||||| | ||||| || |
Sbjct 483314 GAGTAAGGCACAGGGGAGAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGT 483373
Query 46572 TAT--TATCGATGTTA--CTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTA 46627
|| |||| | | |||||| || ||| | ||| |||| || ||| | |
Sbjct 483374 GATGATATCCTGGACAGCCTGTTTGCT----TGGGCGGTGCTTCAAGTGAGAAAATAGAA 483429
Query 46628 AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 46687
|||||||| || ||| ||||| || || | | || | ||||| ||||| || |
Sbjct 483430 GGCATGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCA 483489
Query 46688 GCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGA 46747
| |||| ||| || |||||||| || |||||||| ||||| || ||||| ||| ||||
Sbjct 483490 GACCAGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGA 483549
Query 46748 ATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT--- 46804
| |||||||| || || |||||||| || | | | || | ||| | || |
Sbjct 483550 AAATGCCTTCCACGGCAGCGAATGCAACCAAACGTTGGGCGAAGGTGGACTTCTTGTCTT 483609
Query 46805 GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCA-TTGTTTCTA---TA 46860
||||||| || |||||||| ||||| ||||| | || || | || ||||| ||
Sbjct 483610 GAATCCATCTAACTGCCCAATCGGCCTTCTTCTTGATGCAGGGGACTTAATTCTAGGTTA 483669
Query 46861 GCAT--TAAAG--------AGAAAGtttttt-----tC--ATCACTA------------- 46890
||| ||| | ||| || | | | || |||| ||
Sbjct 483670 GCACCATAACGGCCATTCAAGACAGATATATCTTACTCGTATCAATAGCATTGAACAAAT 483729
Query 46891 -----------------TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933
|| || ||||| || || || | || || | ||||| |
Sbjct 483730 ACGTCCGTTGTGCTGGCTCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGT 483789
Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993
| ||||| || || ||||| || || || ||||| | || |||| |||||| || |
Sbjct 483790 GGATGTTCTCCATCATGATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTT 483849
Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053
| || || || ||| ||| ||||| || || || ||||| || || || || |
Sbjct 483850 CACCACTGAAACGCTCAACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACG 483909
Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCCAGTCATTGA 47110
| | || || | ||| || ||||| | | ||| ||||||||||| | ||
Sbjct 483910 CGAGAACGTGAGACACAAAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGA 483969
Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170
||| || || | ||| | |||||| || |||||||| || |||||||| || |||||||
Sbjct 483970 GATCCTTGGAAAGATCAATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACA 484029
Query 47171 TATTCCATAT 47180
| | ||| ||
Sbjct 484030 TCTGCCAGAT 484039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712929409459200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |