Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq22 143 6e-29
seq46 122 2e-22
seq39 84.2 5e-11
>seq22
Length=1308897
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| |||||||| || ||||| || ||||||||||| |||| | || |
Sbjct 1149384 GAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACG 1149325
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || ||||| ||||| | | ||| ||||||| | |||||| ||
Sbjct 1149324 ACCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTC 1149265
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || |||||| | || | | |||| ||| ||| || ||||| ||
Sbjct 1149264 CTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 1149205
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || |||||||| ||||||||||||| ||||||
Sbjct 1149204 GATAGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 1149166
>seq46
Length=1090308
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||||||||||| ||||||||||||||||| || | | ||||| |||||
Sbjct 104544 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCC 104603
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| || | ||| ||||||| | ||||| ||||| ||
Sbjct 104604 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCC 104663
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || ||||| | || | | ||||||| || || ||||| || || ||
Sbjct 104664 TGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTC 104723
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||||||||| || || | |||||
Sbjct 104724 TTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755
Score = 111 bits (122), Expect = 4e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | || ||||| ||| |||||||||||||| ||| |||||||
Sbjct 104309 GAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCG 104368
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || ||||| || || | ||| ||||||| | ||| || ||
Sbjct 104369 TCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTC 104428
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| |||||||| || || || | || | | |||| || ||| ||||| | ||
Sbjct 104429 CTTATCTTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCAAGGT 104488
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || || || ||||||||||| ||||||| |||||
Sbjct 104489 AATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527
Score = 102 bits (112), Expect = 2e-16
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||||||||| |||||||| || |||||||| || |||| | |||| || ||
Sbjct 104771 GAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGTTCGGCCGTC 104830
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || |||||||| || | ||| || |||| | ||| || ||||| ||
Sbjct 104831 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTC 104890
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||| || || || || | || | | |||| || ||| || |||||||| || ||
Sbjct 104891 TTGGATCTTGCTCTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGT 104950
Query 152072 TTTGCCCGTGA 152082
||||| ||||
Sbjct 104951 CTTGCCGGTGA 104961
Score = 87.8 bits (96), Expect = 4e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | || ||||| || || ||||||||||| ||| ||||| | |||||
Sbjct 104087 GAGGACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATC 104146
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || ||||| || || | ||| ||||||| | ||| || ||||| ||
Sbjct 104147 CTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTC 104206
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | | || || || ||||| ||||| |||||
Sbjct 104207 CTGGATCTTAGACTTGACGTTGTCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGT 104266
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | ||||||||||| | ||||||
Sbjct 104267 CTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 104299
>seq39
Length=1363582
Score = 84.2 bits (92), Expect = 5e-11
Identities = 129/182 (71%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974
|| ||||| ||||| || | | |||| ||||| || || ||||| || |||||||
Sbjct 689496 TTCTGGATATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTT--CCAGCGAAGA 689553
Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034
| | | ||| ||||||| | ||||||||||| || || || || |||||| | |
Sbjct 689554 TCAATCGCTGTTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGT 689613
Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
| | | | || || ||| || ||||| || ||||| || ||||| || ||||| ||||
Sbjct 689614 CGATGGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGA 689673
Query 152095 AG 152096
||
Sbjct 689674 AG 689675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153812521335760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |