Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq46 178 3e-39
seq22 172 1e-37
seq39 120 6e-22
seq24 113 9e-20
>seq46
Length=1090308
Score = 178 bits (196), Expect = 3e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| || | || |||||||||||||||||||||||
Sbjct 104528 ACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGA 104587
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| || || || || |||||||||| ||| |||||||| ||
Sbjct 104588 GAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGG 104647
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || ||| | || || ||||| || | ||||||
Sbjct 104648 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGAC 104707
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | |||||| || || || |||||
Sbjct 104708 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| |||| |||||||| || ||||||||||||||
Sbjct 104073 CCACCACGAAGACGGAGGACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCTC 104132
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || |||||||| || || || || || || || | ||| |||||||| ||
Sbjct 104133 AAAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGG 104192
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||||||||||| |||||||| | || ||| | || || || ||||| | ||| |||
Sbjct 104193 ATACCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCAATGGTATCCGAGGATTCCACT 104252
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 104253 TCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 104299
Score = 145 bits (160), Expect = 2e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | ||||| || |||||||||||||||||
Sbjct 104300 ACCACCACGGAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCT 104359
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || || |||||||| || || || || || || || | ||| |||||||| ||
Sbjct 104360 CAAAGTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGG 104419
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||| ||||| ||||| | || ||| | ||||| ||||| || | || ||
Sbjct 104420 GATACCCTCCTTATCTTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAAC 104479
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| | || || |||||||| || | |||||| ||||| || |||||
Sbjct 104480 TTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527
Score = 129 bits (142), Expect = 1e-24
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || ||||| | || || || |||||||| ||||| |
Sbjct 104756 ACCGCCACGAAGACGGAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGA 104815
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || || || || || ||||| | ||| ||||| || ||
Sbjct 104816 AAGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGG 104875
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| |||||||||||||||||| ||||| || ||| | ||||| ||||| || | ||||
Sbjct 104876 GATGCCCTCCTTGTCTTGGATC-TTGCTCTTAACGTTGTCGATGGTGTCGGAGGACTCGA 104934
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| || |||||||| ||||| || ||
Sbjct 104935 CCTCAAGAGTGATGGTCTTGCCGGT 104959
>seq22
Length=1308897
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || ||||| | ||| || || |||||||||||||| |
Sbjct 1149393 ACCACCACGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1149334
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || |||||||| || || || |||||||||||||| || |||||||| ||
Sbjct 1149333 GAGGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGG 1149274
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || || | ||||| ||||| |||| || ||
Sbjct 1149273 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 1149214
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| ||||| | ||||| ||||| ||||||||
Sbjct 1149213 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 1149166
>seq39
Length=1363582
Score = 120 bits (132), Expect = 6e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| ||||| |||||||| | || || ||||||||||| ||||| || || || ||||||
Sbjct 689496 TTCTGGATATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATC 689555
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || |||||||| ||||| || ||||| || |||||||| | || || | |||
Sbjct 689556 AATCGCTGTTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCG 689615
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| || || || | || || || || ||||| ||||| ||||| | ||||| |||||
Sbjct 689616 ATGGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAA 689674
>seq24
Length=853129
Score = 113 bits (124), Expect = 9e-20
Identities = 176/249 (71%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222
||| |||| |||| ||||| | ||| | || ||| | || ||| | || || |
Sbjct 483379 ATCATCACCGAAGCTGTTGCCATTGAGCAAGAATTCTTAACAGAGGCTCTCCCCTGT-GC 483321
Query 230223 CTTA-TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTAT 230281
|||| |||||||||| | | ||||||| |||||||||||| ||||| |||||||| |
Sbjct 483320 CTTACTCGGCATGAACTCCGCTCTCATGAAGCAATATATCGAGTTCGTCGCTGATCGACT 483261
Query 230282 TTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGA 230341
||| ||| || || |||||||| || || || |||||||||| || |||||
Sbjct 483260 TTTGACGGCTCTTGGTAACGAGAAATACTACAAGTCAGCAAACCCCTTCGACTTCATGGA 483201
Query 230342 GCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAG 230401
| || |||||| || || || |||||||| || ||||| || | ||||| || |
Sbjct 483200 GAATATCTCACTCGCTGGTAAGACCAACTTCTTTGAGAAGCGGGTTGGTGATTACCAGAA 483141
Query 230402 GCCCGGTGT 230410
| | |||||
Sbjct 483140 GGCTGGTGT 483132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046731689646240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |