Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq46 168 2e-36 seq22 150 4e-31 seq39 120 7e-22 seq73 104 6e-17 >seq46 Length=1090308 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || |||||||| || || || |||||||| ||||| ||| |||||| Sbjct 104752 CAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCAGAC 104693 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || ||||| ||||||||||| || Sbjct 104692 ACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAACAG 104633 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | ||||| | || || ||| || Sbjct 104632 CGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAACATC 104573 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 104572 CAAAAAGAATCTACTCTTCA-CTTG 104549 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||| || ||||| || ||| ||||||||||| ||||| || Sbjct 104961 TCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTTAAGA 104902 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| || ||||| || || ||||| ||||| || || || || |||||||| || | Sbjct 104901 GCAAGATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGCA 104842 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| || || | || ||| |||| |||||| |||| || || || || || | Sbjct 104841 AGCAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTTC 104782 Query 178123 ATCTTGT 178129 ||||||| Sbjct 104781 ATCTTGT 104775 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || ||||| || ||||| || || |||||| ||| || Sbjct 104296 CAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCGGAT 104237 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || ||||| |||||||| || Sbjct 104236 ACCATTGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAACAG 104177 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || |||||||| ||||| | ||| | ||| || ||| || Sbjct 104176 CGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAACATC 104117 Query 178104 CAAAAAGAA 178112 || || ||| Sbjct 104116 CAGAAGGAA 104108 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| || || || || ||| | || || || || ||| Sbjct 104524 CAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCCGAC 104465 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||| || || || || ||||| |||||||| || Sbjct 104464 ACCATCGACAACGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAACAG 104405 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || |||||||| |||||| | ||| | ||| || ||| || Sbjct 104404 CGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAACATC 104345 Query 178104 CAAAAAGA 178111 ||||| || Sbjct 104344 CAAAAGGA 104337 >seq22 Length=1308897 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 1149169 CAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 1149228 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || ||||||||||||||||| || Sbjct 1149229 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAACAG 1149288 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||||| || ||||| | || || |||| || ||| || Sbjct 1149289 CGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAACATC 1149348 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 1149349 CAGAAGGAGTCCACCCTTCATCTCGT 1149374 >seq39 Length=1363582 Score = 120 bits (132), Expect = 7e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || |||||||| |||||||| || || |||||| Sbjct 689674 TTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCGTCCGATACCATC 689615 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| ||||| || |||||||| ||||||||||| || ||| | Sbjct 689614 GACAATGTCAAGTCGAAGATCCAGGATAAGGAAGGAATTCCTCCGGACCAACAGCGATTG 689555 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 |||||||| ||||| || ||||| ||||| Sbjct 689554 ATCTTCGCTGGAAAGCAACTCGAGGATGG 689526 >seq73 Length=484926 Score = 104 bits (114), Expect = 6e-17 Identities = 189/274 (69%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187 ||| ||||||||||| |||||| ||||| ||||| ||||| || |||| Sbjct 51331 GTTCTTCTGGTTGCTCTTGCGGTTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGT 51272 Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247 |||| ||| || |||| ||| || |||||| | ||| ||||| ||| |||| ||| Sbjct 51271 CTCGGTTTGTGCTTCAAGGATGGAATACCAGAGCTTTTGAGCCTTTACGGTCTTTC-GGC 51213 Query 214248 TCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306 ||| |||||| || ||||| || || | || ||||| || ||||||||||| Sbjct 51212 CCTTGCCCTCGCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTG 51153 Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366 | ||||| ||| ||| || || || | || |||| | ||| || | | || || | Sbjct 51152 CTAGACCAGGACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCT 51093 Query 214367 TCATGAAAAGGTCGGAAGTCCAGATTGCATAAAA 214400 ||||||| || |||| | |||| | ||||| || Sbjct 51092 TCATGAAGAGATCGGGAATCCACAAGGCATAGAA 51059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722563228640