Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq46 168 2e-36
seq22 150 4e-31
seq39 120 7e-22
seq73 104 6e-17
>seq46
Length=1090308
Score = 168 bits (186), Expect = 2e-36
Identities = 161/205 (79%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || |||||||| || || || |||||||| ||||| ||| ||||||
Sbjct 104752 CAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCAGAC 104693
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| |||||||||||||| || ||||| ||||||||||| ||
Sbjct 104692 ACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAACAG 104633
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || ||||| || ||||| | ||||| | || || ||| ||
Sbjct 104632 CGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAACATC 104573
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||||||||| || || || ||||
Sbjct 104572 CAAAAAGAATCTACTCTTCA-CTTG 104549
Score = 131 bits (144), Expect = 4e-25
Identities = 141/187 (75%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||| || ||||| || ||| ||||||||||| ||||| ||
Sbjct 104961 TCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTTAAGA 104902
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| || ||||| || || ||||| ||||| || || || || |||||||| || |
Sbjct 104901 GCAAGATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGCA 104842
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| |||||||| || || | || ||| |||| |||||| |||| || || || || || |
Sbjct 104841 AGCAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTTC 104782
Query 178123 ATCTTGT 178129
|||||||
Sbjct 104781 ATCTTGT 104775
Score = 129 bits (142), Expect = 1e-24
Identities = 142/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || | || ||||| || ||||| || || |||||| ||| ||
Sbjct 104296 CAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCGGAT 104237
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || || ||||| |||||||| ||
Sbjct 104236 ACCATTGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAACAG 104177
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || |||||||| ||||| | ||| | ||| || ||| ||
Sbjct 104176 CGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAACATC 104117
Query 178104 CAAAAAGAA 178112
|| || |||
Sbjct 104116 CAGAAGGAA 104108
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || |||||||| || || || || ||| | || || || || |||
Sbjct 104524 CAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCCGAC 104465
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || |||||||| || || || || ||||| |||||||| ||
Sbjct 104464 ACCATCGACAACGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAACAG 104405
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || |||||||| |||||| | ||| | ||| || ||| ||
Sbjct 104404 CGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAACATC 104345
Query 178104 CAAAAAGA 178111
||||| ||
Sbjct 104344 CAAAAGGA 104337
>seq22
Length=1308897
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || || |||||||| |||||||| || |||
Sbjct 1149169 CAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 1149228
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || ||||||||||||||||| ||
Sbjct 1149229 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAACAG 1149288
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||| || ||||| || ||||| | || || |||| || ||| ||
Sbjct 1149289 CGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAACATC 1149348
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 1149349 CAGAAGGAGTCCACCCTTCATCTCGT 1149374
>seq39
Length=1363582
Score = 120 bits (132), Expect = 7e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || || || || || || |||||||| |||||||| || || ||||||
Sbjct 689674 TTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCGTCCGATACCATC 689615
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| ||||| || |||||||| ||||||||||| || ||| |
Sbjct 689614 GACAATGTCAAGTCGAAGATCCAGGATAAGGAAGGAATTCCTCCGGACCAACAGCGATTG 689555
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
|||||||| ||||| || ||||| |||||
Sbjct 689554 ATCTTCGCTGGAAAGCAACTCGAGGATGG 689526
>seq73
Length=484926
Score = 104 bits (114), Expect = 6e-17
Identities = 189/274 (69%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187
||| ||||||||||| |||||| ||||| ||||| ||||| || ||||
Sbjct 51331 GTTCTTCTGGTTGCTCTTGCGGTTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGT 51272
Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247
|||| ||| || |||| ||| || |||||| | ||| ||||| ||| |||| |||
Sbjct 51271 CTCGGTTTGTGCTTCAAGGATGGAATACCAGAGCTTTTGAGCCTTTACGGTCTTTC-GGC 51213
Query 214248 TCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306
||| |||||| || ||||| || || | || ||||| || |||||||||||
Sbjct 51212 CCTTGCCCTCGCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTG 51153
Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366
| ||||| ||| ||| || || || | || |||| | ||| || | | || || |
Sbjct 51152 CTAGACCAGGACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCT 51093
Query 214367 TCATGAAAAGGTCGGAAGTCCAGATTGCATAAAA 214400
||||||| || |||| | |||| | ||||| ||
Sbjct 51092 TCATGAAGAGATCGGGAATCCACAAGGCATAGAA 51059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203722563228640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |