Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq3769 109 5e-19
seq1908 82.4 6e-11
>seq3769
Length=13229
Score = 109 bits (120), Expect = 5e-19
Identities = 199/278 (72%), Gaps = 24/278 (9%)
Strand=Plus/Plus
Query 23678 CGCCGAGGCCCAGGTCATCGCGGTCCGT-GTGCACGACCAGGCTGCGGCCCAATATACT- 23735
|||||||||| ||||| || | |||| ||||||||| | | |||||||| || |
Sbjct 9847 CGCCGAGGCCGAGGTCGTCCTCG-CCGTCGTGCACGACGACACCGCGGCCCAGGATCGTG 9905
Query 23736 CAACGGCCCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795
| ||||| | | ||||| || ||| ||||| | | || |||| || |||||||
Sbjct 9906 CGGCGGCC-ACAGAGGGTGATGACGCTGTCGGTGAAGTCGATGG---TG---GCGGTGCC 9958
Query 23796 GCCC--GCAGAGCGC-ACGTTGCCCAGGTCGCCGACGTGTC-GCTCCGCGGCGTCGGGCG 23851
| || || | | | | |||||| |||||||||||||| | | ||||| ||| ||||
Sbjct 9959 GTCCTCGCCGGCCTCGATGTTGCCGAGGTCGCCGACGTGGCGGTTCCGCTCGGTC-GGCG 10017
Query 23852 CGCCGTGTCTCTGGCGGGT---GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGT--- 23905
|| |||| || |||| | |||||| ||||| |||| | ||| ||||||||||
Sbjct 10018 CGGCGTG---CTCGCGGTTGAAGGGGTTGTAGTGCCCGCCGGTGGAGGTGCAGCCGTCGG 10074
Query 23906 TGCTGGTGTCGCCGAATTCGTGCACGTGAAAACCGTGC 23943
|| | |||||||||| |||| ||||| || ||||||
Sbjct 10075 TGAAGATGTCGCCGAAGGCGTGGACGTGGAAGCCGTGC 10112
>seq1908
Length=40588
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868
|||||||| ||||| |||| ||| ||||| | | || ||| || ||||| ||| || |
Sbjct 7910 ACGTTGCCGAGGTCACCGATGTGGCGCTCAGAGTCGGTGGGGGCACCGTGCTTCTTGCCG 7851
Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928
|||||| ||||| |||| || || ||||||||||| | ||| ||||| | |||
Sbjct 7850 TGGGGGTTGAAGTGGGCGCCGGCCGAGGTGCAGCCGTTCGAGAGGTCACCGAACTGGTGG 7791
Query 23929 ACGTGAAAACCGTGC 23943
| ||| || ||| ||
Sbjct 7790 ATGTGGAAGCCGCGC 7776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422239530902552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |