Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3769 109 5e-19 seq1908 82.4 6e-11 >seq3769 Length=13229 Score = 109 bits (120), Expect = 5e-19 Identities = 199/278 (72%), Gaps = 24/278 (9%) Strand=Plus/Plus Query 23678 CGCCGAGGCCCAGGTCATCGCGGTCCGT-GTGCACGACCAGGCTGCGGCCCAATATACT- 23735 |||||||||| ||||| || | |||| ||||||||| | | |||||||| || | Sbjct 9847 CGCCGAGGCCGAGGTCGTCCTCG-CCGTCGTGCACGACGACACCGCGGCCCAGGATCGTG 9905 Query 23736 CAACGGCCCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795 | ||||| | | ||||| || ||| ||||| | | || |||| || ||||||| Sbjct 9906 CGGCGGCC-ACAGAGGGTGATGACGCTGTCGGTGAAGTCGATGG---TG---GCGGTGCC 9958 Query 23796 GCCC--GCAGAGCGC-ACGTTGCCCAGGTCGCCGACGTGTC-GCTCCGCGGCGTCGGGCG 23851 | || || | | | | |||||| |||||||||||||| | | ||||| ||| |||| Sbjct 9959 GTCCTCGCCGGCCTCGATGTTGCCGAGGTCGCCGACGTGGCGGTTCCGCTCGGTC-GGCG 10017 Query 23852 CGCCGTGTCTCTGGCGGGT---GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGT--- 23905 || |||| || |||| | |||||| ||||| |||| | ||| |||||||||| Sbjct 10018 CGGCGTG---CTCGCGGTTGAAGGGGTTGTAGTGCCCGCCGGTGGAGGTGCAGCCGTCGG 10074 Query 23906 TGCTGGTGTCGCCGAATTCGTGCACGTGAAAACCGTGC 23943 || | |||||||||| |||| ||||| || |||||| Sbjct 10075 TGAAGATGTCGCCGAAGGCGTGGACGTGGAAGCCGTGC 10112 >seq1908 Length=40588 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868 |||||||| ||||| |||| ||| ||||| | | || ||| || ||||| ||| || | Sbjct 7910 ACGTTGCCGAGGTCACCGATGTGGCGCTCAGAGTCGGTGGGGGCACCGTGCTTCTTGCCG 7851 Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928 |||||| ||||| |||| || || ||||||||||| | ||| ||||| | ||| Sbjct 7850 TGGGGGTTGAAGTGGGCGCCGGCCGAGGTGCAGCCGTTCGAGAGGTCACCGAACTGGTGG 7791 Query 23929 ACGTGAAAACCGTGC 23943 | ||| || ||| || Sbjct 7790 ATGTGGAAGCCGCGC 7776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422239530902552