Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 150 2e-31
seq1321 136 4e-27
seq180 113 5e-20
seq3132 104 2e-17
seq3769 100 3e-16
seq3777 87.8 2e-12
>seq2686
Length=8065
Score = 150 bits (166), Expect = 2e-31
Identities = 161/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||| || |||||| |||| || || | ||
Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || || | ||||| |||||||||||| | |||||
Sbjct 6729 GACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 6671
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| ||||| ||||| || |||| |||||||| ||||||||
Sbjct 6670 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 6611
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 6610 CATCCAGAAGGAGTCGACCCTCCACCTCGT 6581
>seq1321
Length=24731
Score = 136 bits (150), Expect = 4e-27
Identities = 161/216 (75%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| |||||||| | ||| | |||| | ||| |||| || ||| |
Sbjct 18995 AGAAGGCCGACTGGGCGCTCAAGTACATCACAC-CAGATATGCC--CTTCCGCACGCGTC 19051
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|| | ||||| ||| || |||||| ||||||| |||||| ||||| ||||| || |
Sbjct 19052 TGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATCTTCT 19111
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||||||||| || || || |||| |||||| || ||| ||||||||||||||| | |
Sbjct 19112 GGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCG 19171
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197
||||||| |||| |||||| ||||| | ||||
Sbjct 19172 ACGAGGGCATGCACACCGACTTCGCCTGCCTCCTGT 19207
>seq180
Length=11059
Score = 113 bits (124), Expect = 5e-20
Identities = 140/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769
||||| ||||| || ||||| |||| ||||| | | |||| | | | |||| ||||
Sbjct 10930 CTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAA 10872
Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829
| || || | ||||| ||||| || || | |||||||| || ||||||| ||||||
Sbjct 10871 GTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGG 10812
Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889
|| ||||| || |||| ||||| || ||||||||||||||||||||| | |||||
Sbjct 10811 AAAGCAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTACGCT 10752
Query 40890 GCATCTAGT 40898
|| || ||
Sbjct 10751 CCACCTGGT 10743
>seq3132
Length=21318
Score = 104 bits (114), Expect = 2e-17
Identities = 187/266 (70%), Gaps = 17/266 (6%)
Strand=Plus/Plus
Query 139378 GCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGC-ACGTCGGCCGGCG 139436
||||||||||||||| ||||||| ||||||| || || ||| || | ||||||
Sbjct 14629 GCACGGCTTCCACGTACACGAGTACGGCGACCTCTCGAAGGGCTGCGACAGCA-CCGGCG 14687
Query 139437 AGCACTTCAACCC---CGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCACG 139493
||||| |||||| ||||| | |||||||||||||| || | ||| | |||||
Sbjct 14688 CGCACTACAACCCGTTCGCGCAC---GACCACGGCGCGCCGTCCGACAAGAACCGGCACA 14744
Query 139494 TCGGCGACCTGGGCAACCTCGAGTCGG-CGGGCCGCGACGCGCTCACCGAGGTGAGCCTG 139552
|||||||||| || ||| || || ||| || || ||| || || || | | |
Sbjct 14745 TCGGCGACCTCGGGAACATCAAGGCGGACGAGC----ACGGTGTCGCCAAGATCGACATC 14800
Query 139553 ACGGACGGCGTCGTGTCCCTGTACGGTCCGCACAGCATCATCGG--ACGGAGTCTGGTCG 139610
| |||| || ||||| ||||| || ||||| | |||| || ||||||| || |
Sbjct 14801 AAGGACTGCCTCGTGCGCCTGTGTGGCGAGCACAACGTCATGGGGCGCGGAGTC--GTGG 14858
Query 139611 TGCACACGGACAGGGACGATCTGGGC 139636
|||| | |||| ||||| ||||||
Sbjct 14859 TGCATGCCGACAACGACGACCTGGGC 14884
>seq3769
Length=13229
Score = 100 bits (110), Expect = 3e-16
Identities = 203/289 (70%), Gaps = 18/289 (6%)
Strand=Plus/Minus
Query 139360 CGGCCTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCA---A 139416
|||||| | | |||| ||||||||||||||| |||| ||||||||| || |
Sbjct 10130 CGGCCTCACCCCCGGCAAGCACGGCTTCCACGTCCACGCCTTCGGCGACATCTTCACCGA 10071
Query 139417 CGGGTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGA 139476
||| ||||| || |||||| ||||| ||||||| ||| || |||| |||||| ||
Sbjct 10070 CGGCTGCACCTCCACCGGCGGGCACTACAACCCCTTCAACCGCGAGCACGCCGCGCC-GA 10012
Query 139477 CGCCGAG---ATCAGGCACGTCGGCGACCTGGGCAACCTCGA-GTCGGCG-GGCCGCGAC 139531
| |||| | | | |||||||||||||| |||||| |||| | ||||| || || ||
Sbjct 10011 C--CGAGCGGAACCGCCACGTCGGCGACCTCGGCAACATCGAGGCCGGCGAGGACGGCAC 9954
Query 139532 GCGCTCACCGAGGTGAGCCTGACGGACGGCGTCGTGTCCCTGTACGGTCCGCACAGCATC 139591
||| |||| | | | || ||| ||||| | |||| | || | | || |||
Sbjct 9953 -CGC-CACC---ATCGACTTCACCGACAGCGTCATCACCCTCTGTGGCCGCCGCACGATC 9899
Query 139592 ATCGGACGGAGTCTGGTCGTGCAC-ACGGACAGGGACGATCTGGGCCTC 139639
| || || || | ||||||||| |||| | |||||| || ||||||
Sbjct 9898 CTGGGCCGCGGTGTCGTCGTGCACGACGG-CGAGGACGACCTCGGCCTC 9851
>seq3777
Length=32121
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/141 (76%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 139378 GCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGC-ACGTCGGCCGGCG 139436
|||||| |||||||||||||||| ||||||| ||| || ||| || | | ||||
Sbjct 11326 GCACGGTTTCCACGTGCACGAGTACGGCGACCTCTCCAAAGGCTGCGACAGCA-CGGGCG 11268
Query 139437 AGCACTTCAACCCCG-CGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCACGTC 139495
|| | ||||||| ||||| | |||||||||||||| | | ||| ||||||| ||
Sbjct 11267 CTCATTACAACCCCTTCGCGCATG-ACCACGGCGCGCCCTCGGACAAGAACAGGCACATC 11209
Query 139496 GGCGACCTGGGCAACCTCGAG 139516
|||||||| |||||| || ||
Sbjct 11208 GGCGACCTCGGCAACATCAAG 11188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515194585402720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |