Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2686 150 2e-31 seq1321 136 4e-27 seq180 113 5e-20 seq3132 104 2e-17 seq3769 100 3e-16 seq3777 87.8 2e-12 >seq2686 Length=8065 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| |||| || || | || Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||||||| | ||||| Sbjct 6729 GACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 6671 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| |||||||| |||||||| Sbjct 6670 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 6611 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 6610 CATCCAGAAGGAGTCGACCCTCCACCTCGT 6581 >seq1321 Length=24731 Score = 136 bits (150), Expect = 4e-27 Identities = 161/216 (75%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| |||||||| | ||| | |||| | ||| |||| || ||| | Sbjct 18995 AGAAGGCCGACTGGGCGCTCAAGTACATCACAC-CAGATATGCC--CTTCCGCACGCGTC 19051 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 || | ||||| ||| || |||||| ||||||| |||||| ||||| ||||| || | Sbjct 19052 TGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATCTTCT 19111 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || || || |||| |||||| || ||| ||||||||||||||| | | Sbjct 19112 GGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCG 19171 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||||| |||| |||||| ||||| | |||| Sbjct 19172 ACGAGGGCATGCACACCGACTTCGCCTGCCTCCTGT 19207 >seq180 Length=11059 Score = 113 bits (124), Expect = 5e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| ||||| || ||||| |||| ||||| | | |||| | | | |||| |||| Sbjct 10930 CTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAA 10872 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| ||||| || || | |||||||| || ||||||| |||||| Sbjct 10871 GTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGG 10812 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 || ||||| || |||| ||||| || ||||||||||||||||||||| | ||||| Sbjct 10811 AAAGCAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTACGCT 10752 Query 40890 GCATCTAGT 40898 || || || Sbjct 10751 CCACCTGGT 10743 >seq3132 Length=21318 Score = 104 bits (114), Expect = 2e-17 Identities = 187/266 (70%), Gaps = 17/266 (6%) Strand=Plus/Plus Query 139378 GCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGC-ACGTCGGCCGGCG 139436 ||||||||||||||| ||||||| ||||||| || || ||| || | |||||| Sbjct 14629 GCACGGCTTCCACGTACACGAGTACGGCGACCTCTCGAAGGGCTGCGACAGCA-CCGGCG 14687 Query 139437 AGCACTTCAACCC---CGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCACG 139493 ||||| |||||| ||||| | |||||||||||||| || | ||| | ||||| Sbjct 14688 CGCACTACAACCCGTTCGCGCAC---GACCACGGCGCGCCGTCCGACAAGAACCGGCACA 14744 Query 139494 TCGGCGACCTGGGCAACCTCGAGTCGG-CGGGCCGCGACGCGCTCACCGAGGTGAGCCTG 139552 |||||||||| || ||| || || ||| || || ||| || || || | | | Sbjct 14745 TCGGCGACCTCGGGAACATCAAGGCGGACGAGC----ACGGTGTCGCCAAGATCGACATC 14800 Query 139553 ACGGACGGCGTCGTGTCCCTGTACGGTCCGCACAGCATCATCGG--ACGGAGTCTGGTCG 139610 | |||| || ||||| ||||| || ||||| | |||| || ||||||| || | Sbjct 14801 AAGGACTGCCTCGTGCGCCTGTGTGGCGAGCACAACGTCATGGGGCGCGGAGTC--GTGG 14858 Query 139611 TGCACACGGACAGGGACGATCTGGGC 139636 |||| | |||| ||||| |||||| Sbjct 14859 TGCATGCCGACAACGACGACCTGGGC 14884 >seq3769 Length=13229 Score = 100 bits (110), Expect = 3e-16 Identities = 203/289 (70%), Gaps = 18/289 (6%) Strand=Plus/Minus Query 139360 CGGCCTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCA---A 139416 |||||| | | |||| ||||||||||||||| |||| ||||||||| || | Sbjct 10130 CGGCCTCACCCCCGGCAAGCACGGCTTCCACGTCCACGCCTTCGGCGACATCTTCACCGA 10071 Query 139417 CGGGTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGA 139476 ||| ||||| || |||||| ||||| ||||||| ||| || |||| |||||| || Sbjct 10070 CGGCTGCACCTCCACCGGCGGGCACTACAACCCCTTCAACCGCGAGCACGCCGCGCC-GA 10012 Query 139477 CGCCGAG---ATCAGGCACGTCGGCGACCTGGGCAACCTCGA-GTCGGCG-GGCCGCGAC 139531 | |||| | | | |||||||||||||| |||||| |||| | ||||| || || || Sbjct 10011 C--CGAGCGGAACCGCCACGTCGGCGACCTCGGCAACATCGAGGCCGGCGAGGACGGCAC 9954 Query 139532 GCGCTCACCGAGGTGAGCCTGACGGACGGCGTCGTGTCCCTGTACGGTCCGCACAGCATC 139591 ||| |||| | | | || ||| ||||| | |||| | || | | || ||| Sbjct 9953 -CGC-CACC---ATCGACTTCACCGACAGCGTCATCACCCTCTGTGGCCGCCGCACGATC 9899 Query 139592 ATCGGACGGAGTCTGGTCGTGCAC-ACGGACAGGGACGATCTGGGCCTC 139639 | || || || | ||||||||| |||| | |||||| || |||||| Sbjct 9898 CTGGGCCGCGGTGTCGTCGTGCACGACGG-CGAGGACGACCTCGGCCTC 9851 >seq3777 Length=32121 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/141 (76%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 139378 GCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGC-ACGTCGGCCGGCG 139436 |||||| |||||||||||||||| ||||||| ||| || ||| || | | |||| Sbjct 11326 GCACGGTTTCCACGTGCACGAGTACGGCGACCTCTCCAAAGGCTGCGACAGCA-CGGGCG 11268 Query 139437 AGCACTTCAACCCCG-CGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCACGTC 139495 || | ||||||| ||||| | |||||||||||||| | | ||| ||||||| || Sbjct 11267 CTCATTACAACCCCTTCGCGCATG-ACCACGGCGCGCCCTCGGACAAGAACAGGCACATC 11209 Query 139496 GGCGACCTGGGCAACCTCGAG 139516 |||||||| |||||| || || Sbjct 11208 GGCGACCTCGGCAACATCAAG 11188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515194585402720