Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2414 262 8e-65 >seq2414 Length=19474 Score = 262 bits (290), Expect = 8e-65 Identities = 625/927 (67%), Gaps = 32/927 (3%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||| | ||||| || || ||| || || |||||| || | ||||||| Sbjct 1675 TACAACTTCTTCGGCTTCAAGACTCTCGAGCGTTCCTACCTCCTCCGCATCGGTGGCAAG 1734 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| || || ||||||||| | ||||| ||| | ||||| || ||| || || Sbjct 1735 GTCGCCGAGCGCCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAAC 1794 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || || | || ||||||| || | | ||| || |||| | || || || | Sbjct 1795 ATCGACCGTGTCATCGAGACCTATAACCTCATGTCGGAGCGCTACTTCACCCACGCTTCG 1854 Query 248998 CCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 || || ||||||||||| ||||| | ||| | |||| || || ||||| ||| | || Sbjct 1855 CCTACCCTCTTCAACGCTGGTACTCCTCA-CGCTCAGATGTCATCTTGCTTCCTTGTCGC 1913 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTT 249115 |||| | |||||||| | || ||||| || ||||| || || || || | |||| | Sbjct 1914 CATGAAGGACGACTCGATTGATGGCATCTACGACACCCTCAAGACCTGCG-CTCAGATCT 1972 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 | || || ||||| || |||||| | || ||||||||| || ||||| ||||||| Sbjct 1973 CCAAGACTGCCGGCGGTATTGGTCTCCACATCCACAACATCCGTGCCAAGGGCTCGTACA 2032 Query 249176 TCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT-GAGTCC 249234 | ||||| || || | | |||||||| ||| | || || ||| | || || Sbjct 2033 TTGCCGGTACCAACGGTTACTCCAACGGTATCGTTCCCATGCTCCG-TGCGTACGATGCC 2091 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTAT 249288 || || | | | || |||||| ||| ||||| || | || ||||| || Sbjct 2092 ACTGCTCGTTACGTCGACCAGGGCGGCAACAAGCGCCCC---GGTGCCTTTGCCATCTAC 2148 Query 249289 TTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAAC 249348 | || ||||||||||| | || || ||||| ||| | |||||| ||||||| Sbjct 2149 CTCGAGCCTTGGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAG 2208 Query 249349 GAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGC 249408 ||| ||| | || |||||||||||||||| ||| ||| || ||||| | |||||| Sbjct 2209 GAGGAGATGCGTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAG 2268 Query 249409 CGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCAT 249467 || ||| |||| |||||||| ||||| || | | || |||| ||||||| ||| Sbjct 2269 CGTGTCGAGGCGGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGG-CCTTGC 2327 Query 249468 CGA--TCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATC 249525 ||| || || ||| | || ||||| || || |||| ||||| | | |||| Sbjct 2328 CGACGTCCACTCGGAG--GAGTTCGAGCAGCTTTACGAGAAGTACGAGAGCGAGGGCAAG 2385 Query 249526 G---GCAAGACAATCAAGGCTCGGACCCTT---TTTGCGAAGGTGGTGGAGTCCCAGATA 249579 | ||||||| |||||||||| || ||| || || | | | ||| | |||| Sbjct 2386 GGTCGCAAGACCATCAAGGCTCAGAAGCTTTGGTTCGCTA---TCCTCGAGGCTCAGACT 2442 Query 249580 GAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACG 249638 ||||| || || || | | || | | ||| ||||| |||| ||||| ||||| | Sbjct 2443 GAGACTGGTGGTCCCT-TCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCA 2501 Query 249639 GCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAA 249698 ||| || || |||||| ||||| || ||||| | ||| | ||| | |||||||| Sbjct 2502 GCACCTCGGCACCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCC 2561 Query 249699 GGAGGAGATTGCCGTCTGCAACCTGGC 249725 || ||| | |||||||||||||| || Sbjct 2562 TGACGAGGTCGCCGTCTGCAACCTTGC 2588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073713818330496