Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 262 8e-65
>seq2414
Length=19474
Score = 262 bits (290), Expect = 8e-65
Identities = 625/927 (67%), Gaps = 32/927 (3%)
Strand=Plus/Plus
Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877
||| | ||||| | ||||| || || ||| || || |||||| || | |||||||
Sbjct 1675 TACAACTTCTTCGGCTTCAAGACTCTCGAGCGTTCCTACCTCCTCCGCATCGGTGGCAAG 1734
Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937
||| || || ||||||||| | ||||| ||| | ||||| || ||| || ||
Sbjct 1735 GTCGCCGAGCGCCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAAC 1794
Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997
|| || | || ||||||| || | | ||| || |||| | || || || |
Sbjct 1795 ATCGACCGTGTCATCGAGACCTATAACCTCATGTCGGAGCGCTACTTCACCCACGCTTCG 1854
Query 248998 CCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056
|| || ||||||||||| ||||| | ||| | |||| || || ||||| ||| | ||
Sbjct 1855 CCTACCCTCTTCAACGCTGGTACTCCTCA-CGCTCAGATGTCATCTTGCTTCCTTGTCGC 1913
Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTT 249115
|||| | |||||||| | || ||||| || ||||| || || || || | |||| |
Sbjct 1914 CATGAAGGACGACTCGATTGATGGCATCTACGACACCCTCAAGACCTGCG-CTCAGATCT 1972
Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175
| || || ||||| || |||||| | || ||||||||| || ||||| |||||||
Sbjct 1973 CCAAGACTGCCGGCGGTATTGGTCTCCACATCCACAACATCCGTGCCAAGGGCTCGTACA 2032
Query 249176 TCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT-GAGTCC 249234
| ||||| || || | | |||||||| ||| | || || ||| | || ||
Sbjct 2033 TTGCCGGTACCAACGGTTACTCCAACGGTATCGTTCCCATGCTCCG-TGCGTACGATGCC 2091
Query 249235 ACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTAT 249288
|| || | | | || |||||| ||| ||||| || | || ||||| ||
Sbjct 2092 ACTGCTCGTTACGTCGACCAGGGCGGCAACAAGCGCCCC---GGTGCCTTTGCCATCTAC 2148
Query 249289 TTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAAC 249348
| || ||||||||||| | || || ||||| ||| | |||||| |||||||
Sbjct 2149 CTCGAGCCTTGGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAG 2208
Query 249349 GAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGC 249408
||| ||| | || |||||||||||||||| ||| ||| || ||||| | ||||||
Sbjct 2209 GAGGAGATGCGTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAG 2268
Query 249409 CGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCAT 249467
|| ||| |||| |||||||| ||||| || | | || |||| ||||||| |||
Sbjct 2269 CGTGTCGAGGCGGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGG-CCTTGC 2327
Query 249468 CGA--TCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATC 249525
||| || || ||| | || ||||| || || |||| ||||| | | ||||
Sbjct 2328 CGACGTCCACTCGGAG--GAGTTCGAGCAGCTTTACGAGAAGTACGAGAGCGAGGGCAAG 2385
Query 249526 G---GCAAGACAATCAAGGCTCGGACCCTT---TTTGCGAAGGTGGTGGAGTCCCAGATA 249579
| ||||||| |||||||||| || ||| || || | | | ||| | ||||
Sbjct 2386 GGTCGCAAGACCATCAAGGCTCAGAAGCTTTGGTTCGCTA---TCCTCGAGGCTCAGACT 2442
Query 249580 GAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACG 249638
||||| || || || | | || | | ||| ||||| |||| ||||| ||||| |
Sbjct 2443 GAGACTGGTGGTCCCT-TCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCA 2501
Query 249639 GCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAA 249698
||| || || |||||| ||||| || ||||| | ||| | ||| | ||||||||
Sbjct 2502 GCACCTCGGCACCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCC 2561
Query 249699 GGAGGAGATTGCCGTCTGCAACCTGGC 249725
|| ||| | |||||||||||||| ||
Sbjct 2562 TGACGAGGTCGCCGTCTGCAACCTTGC 2588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073713818330496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |