Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2414 275 6e-69 seq2686 111 1e-19 seq1321 93.3 4e-14 >seq2414 Length=19474 Score = 275 bits (304), Expect = 6e-69 Identities = 642/959 (67%), Gaps = 12/959 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || ||||||||||| ||||| ||||| |||||||| |||| |||||| | || || Sbjct 2597 GCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATCTCA 2538 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGA-TTGC 23138 || || || ||| |||| || ||||| | | ||| |||||| | || || ||| Sbjct 2537 GTGCAGAGGTTGGACGACTTGATGGTGCCGAGGT-GCTGCTGGTT-CGACTTGGAGTTGG 2480 Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198 | ||||||||||||||| | || || ||||| ||| | ||||| ||| || Sbjct 2479 CGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGA 2420 Query 23199 GCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGG 23257 ||| | ||||||| | | ||| || ||| ||| || ||||||||| | | Sbjct 2419 ACCAAAGCTTCTGAGCCTTGATG-GTCTTGCGACCCTTGCCCTCGCTCTCGTACTTCTCG 2361 Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317 || | | || || || | || |||||| |||||||| | | || ||| Sbjct 2360 TAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCAC 2301 Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 ||||| |||| ||| || || || |||| || || || || ||||| || Sbjct 2300 ATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGG 2241 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 |||||||| || || ||||| |||| |||||| |||||| |||||| | || | Sbjct 2240 GCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGG 2181 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 ||||| || ||||| || ||||| ||||||||||| | |||||| || || || | ||| Sbjct 2180 AAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTG 2121 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||||||||| ||||||||||| || ||| | |||| | | ||||| || |||| | Sbjct 2120 TTGCCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATA 2061 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 |||||||| ||| || || | ||| || || || || | |||||| | | Sbjct 2060 CCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATG 2001 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 |||| ||| || || ||| | | || || ||| ||||| || || ||||||||| Sbjct 2000 TGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAG 1941 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 ||||| || || ||| || || | ||||| | ||| || || ||||| || || | Sbjct 1940 ATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGA 1881 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 || ||| | || ||| || || || ||||| || ||||| | | |||||| || Sbjct 1880 GGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACATGAGG 1821 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 || || || |||||| | || |||| || ||||| ||||||| || || ||||| Sbjct 1820 TTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACGGACACACGCATA 1761 Query 23858 ATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGT 23914 | ||||| || || | || ||||| || | ||| || || || || ||||| Sbjct 1760 AGCATGTGCTGCGGGCGCTCGGCGACCTTGCCACCG---ATGCGGAGGAGGTAGGAACGC 1704 Query 23915 TGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | | || || || || || ||| || |||||||| |||| | |||||||| Sbjct 1703 TCGAGAGTCTTGAAGCCGAAGAAGTTGTAAGAGAAGTCACGGTCGTAGATGATGGCCGA 1645 >seq2686 Length=8065 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| |||| || || ||||| Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 6729 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6670 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || ||| || | || || ||| Sbjct 6669 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 6610 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || || || || ||| | || | || |||| Sbjct 6609 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGCCTTCGTGGTGGTA 6561 >seq1321 Length=24731 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || ||||| || || || || || || ||||| |||||| || ||||| || || Sbjct 19051 CTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATCTTC 19110 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| || || ||||||| |||||| || || ||||||| | || |||||| Sbjct 19111 TGGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGC 19170 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 |||||||| | || || || || || ||||| ||||| Sbjct 19171 GACGAGGGCATGCACACCGACTTCGCCTGCCTCCTGTAC 19209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445745103510240