Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2414 95.1 2e-14 >seq2414 Length=19474 Score = 95.1 bits (104), Expect = 2e-14 Identities = 182/264 (69%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 94779 GTGGATGCCGAGTCCTCCAGCAGTCTTGGAGAT--GATTGCCGCCTCCTTAAGAGTATCA 94836 ||||| || | || || |||||||||||||| || || | ||| || || || Sbjct 2001 GTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGT--CTTGAGGGTGTCG 1944 Query 94837 TAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT 94896 || || || ||||| || || | | | | | ||||||||| || || | || | Sbjct 1943 TAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGAGC- 1885 Query 94897 GTGACT-GTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACAT 94955 |||| || ||| || || || || || ||||| ||||| || ||| || |||||| Sbjct 1884 GTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACAT 1825 Query 94956 GAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACG 95015 ||| | ||| || || |||||| | ||||| ||||| || ||||| | |||||| Sbjct 1824 GAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACGGACACACG 1765 Query 95016 CATAATCATGTCCTGAGGGCGCTC 95039 ||||| ||||| ||| |||||||| Sbjct 1764 CATAAGCATGTGCTGCGGGCGCTC 1741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989535540690010