Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1321 86.0 8e-12 >seq1321 Length=24731 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/213 (69%), Gaps = 14/213 (7%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||| |||||||| | || | ||||| || || ||||| Sbjct 19199 CAGGCGAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGG 19140 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 ||| |||| || |||||||| || ||||| || |||| |||||||| || || |||||| Sbjct 19139 CCGCGCATCAGACCACGCTTCTTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAG 19080 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTC-------CATAACCGGCGCTGTC 33754 || || || || |||||||| || || | | | |||| | || ||| Sbjct 19079 ATGCCCTCAACACACGCAAAGGCGATCAGACGCGTGCGGAAGGGCATATCTGG---TGTG 19023 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 ||||| ||| | ||||| ||||||||||| Sbjct 19022 ATGTA----CTTGAGCGCCCAGTCGGCCTTCTT 18994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629787510464160