Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1321 86.0 8e-12
>seq1321
Length=24731
Score = 86.0 bits (94), Expect = 8e-12
Identities = 147/213 (69%), Gaps = 14/213 (7%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| ||||| ||| ||||| |||||||| | || | ||||| || || |||||
Sbjct 19199 CAGGCGAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGG 19140
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
||| |||| || |||||||| || ||||| || |||| |||||||| || || ||||||
Sbjct 19139 CCGCGCATCAGACCACGCTTCTTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAG 19080
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTC-------CATAACCGGCGCTGTC 33754
|| || || || |||||||| || || | | | |||| | || |||
Sbjct 19079 ATGCCCTCAACACACGCAAAGGCGATCAGACGCGTGCGGAAGGGCATATCTGG---TGTG 19023
Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787
||||| ||| | ||||| |||||||||||
Sbjct 19022 ATGTA----CTTGAGCGCCCAGTCGGCCTTCTT 18994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629787510464160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |