Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1572 93.3 3e-14 seq2906 89.7 4e-13 >seq1572 Length=3233 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 33575 AGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 |||| || |||||||| || ||| |||||| | ||||||| || || || | ||| Sbjct 2641 AGATCGGTGACAAGTTCGCCTCGCGTCACGGTC-AGAAGGGTACCATTGGTATCACCTAC 2583 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 |||| ||||||||||||||| ||||| || | || |||||||| ||||||||||| Sbjct 2582 CGCCAGGAGGACATGCCGTTCACTGCCGAGGGTATCGTGCCGGACCTCATCATCAACCCG 2523 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 || || | ||||| || ||||| Sbjct 2522 CACGCCATTCCCTCTCGTATGAC 2500 >seq2906 Length=11110 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 33575 AGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 |||| || ||||||||||| ||| |||||| | ||||||| || || || | ||| Sbjct 6787 AGATCGGTGACAAGTTTGCCTCGCGTCACGGTC-AGAAGGGTACCATTGGTATCACATAC 6729 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 |||| |||||||||||| |||||||| || | || ||||| || ||||||||||| Sbjct 6728 CGCCAGGAGGACATGCCGTTTACGGCCGAGGGTATCGTGCCGGATCTCATCATCAACCCG 6669 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 || || | || || || ||||| Sbjct 6668 CACGCCATTCCGTCTCGTATGAC 6646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356217006416266