Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq1572 93.3 3e-14
seq2906 89.7 4e-13
>seq1572
Length=3233
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 33575 AGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633
|||| || |||||||| || ||| |||||| | ||||||| || || || | |||
Sbjct 2641 AGATCGGTGACAAGTTCGCCTCGCGTCACGGTC-AGAAGGGTACCATTGGTATCACCTAC 2583
Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693
|||| ||||||||||||||| ||||| || | || |||||||| |||||||||||
Sbjct 2582 CGCCAGGAGGACATGCCGTTCACTGCCGAGGGTATCGTGCCGGACCTCATCATCAACCCG 2523
Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716
|| || | ||||| || |||||
Sbjct 2522 CACGCCATTCCCTCTCGTATGAC 2500
>seq2906
Length=11110
Score = 89.7 bits (98), Expect = 4e-13
Identities = 107/143 (75%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 33575 AGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633
|||| || ||||||||||| ||| |||||| | ||||||| || || || | |||
Sbjct 6787 AGATCGGTGACAAGTTTGCCTCGCGTCACGGTC-AGAAGGGTACCATTGGTATCACATAC 6729
Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693
|||| |||||||||||| |||||||| || | || ||||| || |||||||||||
Sbjct 6728 CGCCAGGAGGACATGCCGTTTACGGCCGAGGGTATCGTGCCGGATCTCATCATCAACCCG 6669
Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716
|| || | || || || |||||
Sbjct 6668 CACGCCATTCCGTCTCGTATGAC 6646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356217006416266
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |