Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2414 149 9e-31 seq1321 93.3 6e-14 >seq2414 Length=19474 Score = 149 bits (164), Expect = 9e-31 Identities = 354/530 (67%), Gaps = 4/530 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| || ||| || | || || |||||| | |||| |||| | | || Sbjct 2041 ACCAACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGT 2100 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || || || || || | ||| ||||| | || |||||| Sbjct 2101 TACGTCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGG 2160 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || ||||| |||| | ||||| ||| ||| || ||| || Sbjct 2161 CACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCGT 2220 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | ||| | || || || |||||| | || || | ||||||||||| ||| | | Sbjct 2221 GCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCG 2280 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | ||| |||||| ||| |||||||||| | || ||||| || |||| | Sbjct 2281 GACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACTCG 2340 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGT 97165 || ||||| ||| ||| | |||||| |||||| | || |||| | | Sbjct 2341 GAGGAGTTCGAGCAGCTTTACGAGAAGTACGAGAGCGAGGGCAAGGGTCGCAAGACCA-T 2399 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | | || | |||| || ||| || ||| | ||||||| |||||||| ||| | Sbjct 2400 CAAGGCTC-AGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTCCCT 2458 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| ||||||||||| ||| || ||| ||||| | ||| | |||||||||| Sbjct 2459 TCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCATCA 2518 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 || ||||| || ||||| || || | |||||| | || || |||||| Sbjct 2519 AGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTGACGAG 2568 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 97977 ATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGA 98036 ||||| |||| ||| || || || |||||| ||| ||||||||| ||| | Sbjct 3226 ATCATCGCCAACCGTGGTTCGATCCAGAACATTCCCAACATCCCGGACGAGATCAAGGCC 3285 Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||| |||||||||||| || ||| | | ||||| | || |||||| | Sbjct 3286 ATCTACAAGACGGTCTGGGAGATTTCGCAGAAGGCCGTCATCGACCTCGCCGCCGACCGT 3345 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 || | | ||| |||||||| || ||| |||| | || || | | ||| | | | | Sbjct 3346 GGCGCGTTCATCGACCAGAGCCAGTCGCTCAACATCCACCTTTCGAACCCCTCGTTC--T 3403 Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGG 98206 || | | || || || ||||| |||| ||||| ||||||||||| || Sbjct 3404 CGCAGCTCACCTCCATGCACTTCTACGGCTGGAAGCGTGGCCTCAAGACTGG 3455 >seq1321 Length=24731 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGA 125504 || |||||||||||||| ||||| || ||||||||||| |||||||||||||| || Sbjct 19069 GTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATCTTCTGGCTCAAGAAGCGTGGT 19128 Query 125505 CTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGT 125564 || |||| ||| || || | |||||| | || || || ||||||||| | ||| Sbjct 19129 CTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACC 19188 Query 125565 GACTTTGCC 125573 ||||| ||| Sbjct 19189 GACTTCGCC 19197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741023795896720