Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 149 9e-31
seq1321 93.3 6e-14
>seq2414
Length=19474
Score = 149 bits (164), Expect = 9e-31
Identities = 354/530 (67%), Gaps = 4/530 (1%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| ||||| || ||| || | || || |||||| | |||| |||| | | ||
Sbjct 2041 ACCAACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGT 2100
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
||||| ||||||||||| || || || || || | ||| ||||| | || ||||||
Sbjct 2101 TACGTCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGG 2160
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
||||| ||||| || ||||| |||| | ||||| ||| ||| || ||| ||
Sbjct 2161 CACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCGT 2220
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046
||| | ||| | || || || |||||| | || || | ||||||||||| ||| | |
Sbjct 2221 GCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCG 2280
Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106
| ||| |||||| ||| |||||||||| | || ||||| || |||| |
Sbjct 2281 GACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACTCG 2340
Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGT 97165
|| ||||| ||| ||| | |||||| |||||| | || |||| | |
Sbjct 2341 GAGGAGTTCGAGCAGCTTTACGAGAAGTACGAGAGCGAGGGCAAGGGTCGCAAGACCA-T 2399
Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224
| | || | |||| || ||| || ||| | ||||||| |||||||| ||| |
Sbjct 2400 CAAGGCTC-AGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTCCCT 2458
Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284
||| ||||||||||| ||| || ||| ||||| | ||| | ||||||||||
Sbjct 2459 TCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCATCA 2518
Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
|| ||||| || ||||| || || | |||||| | || || ||||||
Sbjct 2519 AGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTGACGAG 2568
Score = 89.7 bits (98), Expect = 8e-13
Identities = 160/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 97977 ATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGA 98036
||||| |||| ||| || || || |||||| ||| ||||||||| ||| |
Sbjct 3226 ATCATCGCCAACCGTGGTTCGATCCAGAACATTCCCAACATCCCGGACGAGATCAAGGCC 3285
Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096
||||||||||| |||||||||||| || ||| | | ||||| | || |||||| |
Sbjct 3286 ATCTACAAGACGGTCTGGGAGATTTCGCAGAAGGCCGTCATCGACCTCGCCGCCGACCGT 3345
Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156
|| | | ||| |||||||| || ||| |||| | || || | | ||| | | | |
Sbjct 3346 GGCGCGTTCATCGACCAGAGCCAGTCGCTCAACATCCACCTTTCGAACCCCTCGTTC--T 3403
Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGG 98206
|| | | || || || ||||| |||| ||||| ||||||||||| ||
Sbjct 3404 CGCAGCTCACCTCCATGCACTTCTACGGCTGGAAGCGTGGCCTCAAGACTGG 3455
>seq1321
Length=24731
Score = 93.3 bits (102), Expect = 6e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGA 125504
|| |||||||||||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct 19069 GTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATCTTCTGGCTCAAGAAGCGTGGT 19128
Query 125505 CTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGT 125564
|| |||| ||| || || | |||||| | || || || ||||||||| | |||
Sbjct 19129 CTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACC 19188
Query 125565 GACTTTGCC 125573
||||| |||
Sbjct 19189 GACTTCGCC 19197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741023795896720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |