Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1138 140 3e-28 seq3434 105 6e-18 >seq1138 Length=41311 Score = 140 bits (154), Expect = 3e-28 Identities = 222/313 (71%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 5584 CTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA 5643 |||| ||| |||||||| || ||||||||| | || |||| ||| || ||| | Sbjct 25951 CTCGAGGATGAGCTGCGCGATGCGGTCGCCCTTGGACACGGCGAAGTCGGCGTCGCCATA 26010 Query 5644 GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCAC 5703 ||||||||| | ||| || | |||||||||||||||||| ||||||||||||||| Sbjct 26011 GTTGAACAGGAGCACCTTGACCTCGCCGCGGTAGTCGGCGTCGATCACGCCCGCGCCCGT 26070 Query 5704 GTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTA-GCACCCAT 5762 |||||| ||||||| |||||||||||||||| || || | ||| ||||| | || | Sbjct 26071 GTCGATCGAGTGCTTCGCCGCCAGGCCGGAGCGCGGCGCGATGCGCCCGTACGTGCCGAC 26130 Query 5763 CGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGCCGACCGCCCGCAGGGACGATGC 5822 |||| | | ||| | | |||| | || | | |||| |||||| ||| || Sbjct 26131 GGGGACGGCGATGCTG-ATGCCCGTCGAGACGAGGGCCTTGCCGCGCGCAGGCACGCTGA 26189 Query 5823 AGT-CGCAAGCGCTGCAGAGGTCGTACCCGGCCGCCCGCGGGGACCCCCTGGTGGGGAGC 5881 || ||| ||| | | | ||||| ||||||| | | | || || | || ||| ||| Sbjct 26190 TGTCCGCCGACGC-GTACAAGTCGTGGCCGGCCGACAGGGACGAGCCGCGGGAGGGCAGC 26248 Query 5882 GTGGCGTTGGGGG 5894 || |||| ||||| Sbjct 26249 GTCGCGTCGGGGG 26261 >seq3434 Length=7857 Score = 105 bits (116), Expect = 6e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 5584 CTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA 5643 |||| ||| |||||||| || ||||||||| | || | || || || ||| | Sbjct 7159 CTCGAGGATGAGCTGCGCGATACGGTCGCCCTTAGCCACGGCAAAGTCCGAGTCGCCATA 7218 Query 5644 GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCAC 5703 ||||||||| | ||| || | |||||||||||||||||| || ||||| |||||| Sbjct 7219 GTTGAACAGGAGCACCTTGACTTCGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCCGT 7278 Query 5704 GTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTA 5754 |||||| ||||||| |||| || || ||||| ||||| | || ||||| Sbjct 7279 GTCGATCGAGTGCTTCGCCGCGAGACCCGAGCGAGGAGCGATACGCCCGTA 7329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430034367797264