Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq1138 140 3e-28
seq3434 105 6e-18
>seq1138
Length=41311
Score = 140 bits (154), Expect = 3e-28
Identities = 222/313 (71%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 5584 CTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA 5643
|||| ||| |||||||| || ||||||||| | || |||| ||| || ||| |
Sbjct 25951 CTCGAGGATGAGCTGCGCGATGCGGTCGCCCTTGGACACGGCGAAGTCGGCGTCGCCATA 26010
Query 5644 GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCAC 5703
||||||||| | ||| || | |||||||||||||||||| |||||||||||||||
Sbjct 26011 GTTGAACAGGAGCACCTTGACCTCGCCGCGGTAGTCGGCGTCGATCACGCCCGCGCCCGT 26070
Query 5704 GTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTA-GCACCCAT 5762
|||||| ||||||| |||||||||||||||| || || | ||| ||||| | || |
Sbjct 26071 GTCGATCGAGTGCTTCGCCGCCAGGCCGGAGCGCGGCGCGATGCGCCCGTACGTGCCGAC 26130
Query 5763 CGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGCCGACCGCCCGCAGGGACGATGC 5822
|||| | | ||| | | |||| | || | | |||| |||||| ||| ||
Sbjct 26131 GGGGACGGCGATGCTG-ATGCCCGTCGAGACGAGGGCCTTGCCGCGCGCAGGCACGCTGA 26189
Query 5823 AGT-CGCAAGCGCTGCAGAGGTCGTACCCGGCCGCCCGCGGGGACCCCCTGGTGGGGAGC 5881
|| ||| ||| | | | ||||| ||||||| | | | || || | || ||| |||
Sbjct 26190 TGTCCGCCGACGC-GTACAAGTCGTGGCCGGCCGACAGGGACGAGCCGCGGGAGGGCAGC 26248
Query 5882 GTGGCGTTGGGGG 5894
|| |||| |||||
Sbjct 26249 GTCGCGTCGGGGG 26261
>seq3434
Length=7857
Score = 105 bits (116), Expect = 6e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 5584 CTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA 5643
|||| ||| |||||||| || ||||||||| | || | || || || ||| |
Sbjct 7159 CTCGAGGATGAGCTGCGCGATACGGTCGCCCTTAGCCACGGCAAAGTCCGAGTCGCCATA 7218
Query 5644 GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCAC 5703
||||||||| | ||| || | |||||||||||||||||| || ||||| ||||||
Sbjct 7219 GTTGAACAGGAGCACCTTGACTTCGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCCGT 7278
Query 5704 GTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTA 5754
|||||| ||||||| |||| || || ||||| ||||| | || |||||
Sbjct 7279 GTCGATCGAGTGCTTCGCCGCGAGACCCGAGCGAGGAGCGATACGCCCGTA 7329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430034367797264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |