Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2414 398 2e-105 >seq2414 Length=19474 Score = 398 bits (440), Expect = 2e-105 Identities = 1139/1730 (66%), Gaps = 36/1730 (2%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||||||||| ||| | |||||||| | | |||||||| || | | || Sbjct 1741 GAGCGCCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGA- 1799 Query 363508 GCCGCG--ATTGAAACATATAAGCT--TCTAAGTGCTCGTGTA-TTCACGCACGCCACGC 363562 ||| | || || || ||||| || | | | || | || ||||| ||||| ||| Sbjct 1800 -CCGTGTCATCGAGACCTATAACCTCATGTCGGAGCGC---TACTTCACCCACGCTTCGC 1855 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 | || | | ||| ||||| |||| | | | |||||||| |||||||| ||| | | Sbjct 1856 CTACCCTCTTCAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTCCTTGTCGCCA 1915 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 |||||||||| || || || || |||| ||||| || |||| || |||| || |||| Sbjct 1916 TGAAGGACGACTCGATTGATGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCA 1975 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTC 363742 ||| ||| ||||| |||||| | |||||||| | ||||| || | |||||| Sbjct 1976 AGACTGCCGGCGGTATTGGTCTCCACATCCACAACATCCGTGCCAAGGGCTCGTACATTG 2035 Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||| || || ||||| || || | ||||||||||| |||| || || |||| Sbjct 2036 CCGGTACCAACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTG 2095 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 | | |||||||||||||| || |||||| || || ||||| || || ||||||| Sbjct 2096 CTCGTTACGTCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGC 2155 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 || || ||||| | || || || || || ||||| || ||| || || ||||| Sbjct 2156 CTTGGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGA 2215 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 ||||||| ||||| || ||||| || || ||| | | |||| || |||||||| || | Sbjct 2216 TGCGTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCG 2275 Query 363983 AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 |||| | | ||| | ||| | ||||| ||| || || || ||| |||| || Sbjct 2276 AGGCGGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCC 2335 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 || || | | || ||||| ||||| || ||||| |||| ||| |||| Sbjct 2336 ACTCGGAGGAGTTCGAGCAGCTTTACGAGAAGTACGAGAGCGAGGGCAAGGGTCGCAAGA 2395 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | || || |||||||| ||||| || ||| | || | |||| |||||| || | Sbjct 2396 CCATCAAGGCTCAGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTC 2455 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 ||| ||| | ||||| || | |||| |||||| |||||||||||||| || || | Sbjct 2456 CCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCA 2515 Query 364223 TTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 | || | |||||| || || ||||| ||||| ||| | | || |||||| |||| Sbjct 2516 TCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTGACGAGGTCGCCG 2575 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA---AGATGGT---ACTTTTG 364336 | || |||||||| ||||| || ||||| || ||||| | || | | |||| | Sbjct 2576 TCTGCAACCTTGCCTCGATTGCTCTTCCCGCCTTTGTCGACTTTGAGGCTCAGACTTACG 2635 Query 364337 ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCG 364396 || | || | || | || | ||| | | || || |||||| |||| ||| Sbjct 2636 ACTTCAAGAAGCTGCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCATC- 2694 Query 364397 ACAAG-AATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTCATCGCCCGAT 364454 || | || || || || || | || | || || || ||||| || ||||| | Sbjct 2695 ACTCGCAACTACTA-CCCCGTCAAGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCGT 2753 Query 364455 TGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTC 364514 ||||| ||||| ||||| ||||| ||| || ||| ||| ||| | || || || Sbjct 2754 CGGTCTCGGTGTTCAGGGTCTCGCCGACACCTTCATGGCTCTCCGCATGCCCTTCGACTC 2813 Query 364515 GCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-GA 364573 |||||| ||||||| || || ||||||| || || || || ||||| | || Sbjct 2814 GCCTGAGGCTCGTGAGCTCAACCTCAAGATCTTCGAGACCATCTACCACGCCGCCCTCGA 2873 Query 364574 CTGCTTCGTGTGA-TTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 | | || | || ||| ||| | | || |||||| | | || ||||| || || Sbjct 2874 GT-CGTCCAGCGAGCTTGCCAAGGAGC-TCGGCAAGTACCCCTCGTACGAGGGCTCGCCC 2931 Query 364633 CTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAAC 364692 | || ||||| || ||||||| || || ||| | || | | || ||| || Sbjct 2932 ATCTCCCAGGGCAAGCTCCAGTTCGACCTCTGGGGCCGTGCTCCTACCGACCTCTGGGAC 2991 Query 364693 TGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC---CCTCGTTACA 364749 |||| | || ||| | | | | |||| ||| |||||||| |||||| Sbjct 2992 TGGGCCCCTCTCCGTGCGCAGATCAGCGAGCACGGTGTGCGCAACTCGCTTCTCGTT--- 3048 Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || |||||||| || ||||| || | ||||||||||| |||||||||||||| || Sbjct 3049 GCCCCCATGCCTACTGCTTCGACCTCGCAGATCCTCGGCTGGAACGAGTGCTTCGAGCCA 3108 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || | || || | ||||| || || || || || || | ||| || Sbjct 3109 TACACCTCGATGCTCTACGCTCGCCGTGTGCTCTCGGGTGACTTCCAGGTTGTCTGCCCA 3168 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | || | || || | ||| ||| | |||| |||| |||||||||| ||| Sbjct 3169 TGGCTCCTGCGTGACCTGATCAACCTCGGCATCTGGGACGACAACATGAAGAACCTCATC 3228 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 |||||| |||||| | ||||||||||| | || || || | ||| | || Sbjct 3229 ATCGCCAACCGTGGTTCGATCCAGAACATTCCCAACATCCCGGACGAGATCAAGGCCATC 3288 Query 364990 TACAAAACCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGATATGGCGGCCGATCGC 365046 ||||| || || ||||| ||||| || ||| | |||| || | || ||||| || Sbjct 3289 TACAAGACGGTCTGGGAGATTTCGCA---GAAGGCCGTCATCGACCTCGCCGCCGACCGT 3345 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCC 365106 || || || ||| |||||||||||| | ||| | | | | | || | | | | Sbjct 3346 GGCGCGTTCATCGACCAGAGCCAGTCGCTCAACATCCACCTTTCGAACCCCTCGTTCTCG 3405 Query 365107 AAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||| || |||||||| |||||||| ||||| || || ||||| || Sbjct 3406 CAGCTCACCTCCATGCACTTCTACGGCTGGAAGCGTGGCCTCAAGACTGG 3455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303289775588804