Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 122 8e-23
seq1321 118 1e-21
seq238 96.9 3e-15
seq180 95.1 1e-14
>seq2686
Length=8065
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || | || | |||||||||||| || |||||||| ||
Sbjct 6563 CCACCACGAAGGCGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 6622
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || |||
Sbjct 6623 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGG 6682
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 6683 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCCACC 6742
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | || || || || || || || ||||| ||||||||
Sbjct 6743 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6789
>seq1321
Length=24731
Score = 118 bits (130), Expect = 1e-21
Identities = 248/357 (69%), Gaps = 12/357 (3%)
Strand=Plus/Plus
Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146
|| ||| | || ||||| ||||||||||| | |||| |||| || ||| || ||
Sbjct 18982 CCCTGCATCCGGAAGAAGGCCGACTGGGCGCTCAAGTACATCA-CACCAGATATGCC-CT 19039
Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206
| ||| |||| || | ||||||||| ||| |||||| |||| || || ||| ||
Sbjct 19040 TCCGCAC-GCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTC 19098
Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265
|| |||||||| | |||| || | || | | |||| |||||| || || ||||||
Sbjct 19099 GCGGCCATCTTCTGGCTCAAGAAGCGTGGTC-TGATGCGCGGCCTCACCTTCTCCAACGA 19157
Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325
||| || ||||||||||||||| |||| || ||||| || || ||| || || || |
Sbjct 19158 GCTCATCTCGCGCGACGAGGGCATGCACACCGACTTCGCCTGCCTC--CTGTACCAGT-A 19214
Query 46326 CGTGCACGACAAGCTTGCGCCC-GA-CACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCC 46383
| || || || ||| ||| || | |||| |||| || |||||| || |
Sbjct 19215 CCTG--CGGCACCGGTGCTCCCAGAGCGAGGTGCATCGCATCGTCTCGGAGGCAGTCGAG 19272
Query 46384 ATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440
|| ||||||||||| | || | ||| || || |||||| | ||||| ||||||
Sbjct 19273 ATCGAGAAGGAGTTCCTGACAGACGCCCTCCCATGCGCCCTGATCGGCATCAACGCA 19329
>seq238
Length=11627
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 131071 GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATT 131130
||||| |||||| ||||||||||| ||| |||| | |||||||||||| ||||||||
Sbjct 11566 GTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATA 11507
Query 131131 CCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCG 131190
|| || ||||| ||||||| ||||| | || | || || | |||||||| ||
Sbjct 11506 CCCTCCTTGTCCTGGATTTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCA 11447
Query 131191 ACGGTAACGGTTTTACCGGTTAG 131213
| ||| | ||| || ||||| ||
Sbjct 11446 AGGGTGATGGTCTTGCCGGTGAG 11424
>seq180
Length=11059
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| || | ||| || || | || | || |||||||| || |||||||| ||
Sbjct 10724 GCCACCACGAAGACGGAGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 10783
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| |||||| |||||||| || ||| |||| | |||||||||||| |||||
Sbjct 10784 AAGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 10843
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || || ||||| ||| ||| ||||| | || | || || | |||||||
Sbjct 10844 AATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGACGACTCGAC 10903
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAG 131213
|||| || | || || ||||| ||
Sbjct 10904 CTCGAGAGTGATCGTCTTGCCGGTGAG 10930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471990249588480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |