Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2686 122 8e-23 seq1321 118 1e-21 seq238 96.9 3e-15 seq180 95.1 1e-14 >seq2686 Length=8065 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | |||||||||||| || |||||||| || Sbjct 6563 CCACCACGAAGGCGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 6622 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 6623 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGG 6682 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 6683 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCCACC 6742 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || ||||| |||||||| Sbjct 6743 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6789 >seq1321 Length=24731 Score = 118 bits (130), Expect = 1e-21 Identities = 248/357 (69%), Gaps = 12/357 (3%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | || ||||| ||||||||||| | |||| |||| || ||| || || Sbjct 18982 CCCTGCATCCGGAAGAAGGCCGACTGGGCGCTCAAGTACATCA-CACCAGATATGCC-CT 19039 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 | ||| |||| || | ||||||||| ||| |||||| |||| || || ||| || Sbjct 19040 TCCGCAC-GCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTC 19098 Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 || |||||||| | |||| || | || | | |||| |||||| || || |||||| Sbjct 19099 GCGGCCATCTTCTGGCTCAAGAAGCGTGGTC-TGATGCGCGGCCTCACCTTCTCCAACGA 19157 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 ||| || ||||||||||||||| |||| || ||||| || || ||| || || || | Sbjct 19158 GCTCATCTCGCGCGACGAGGGCATGCACACCGACTTCGCCTGCCTC--CTGTACCAGT-A 19214 Query 46326 CGTGCACGACAAGCTTGCGCCC-GA-CACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCC 46383 | || || || ||| ||| || | |||| |||| || |||||| || | Sbjct 19215 CCTG--CGGCACCGGTGCTCCCAGAGCGAGGTGCATCGCATCGTCTCGGAGGCAGTCGAG 19272 Query 46384 ATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440 || ||||||||||| | || | ||| || || |||||| | ||||| |||||| Sbjct 19273 ATCGAGAAGGAGTTCCTGACAGACGCCCTCCCATGCGCCCTGATCGGCATCAACGCA 19329 >seq238 Length=11627 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 131071 GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATT 131130 ||||| |||||| ||||||||||| ||| |||| | |||||||||||| |||||||| Sbjct 11566 GTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATA 11507 Query 131131 CCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCG 131190 || || ||||| ||||||| ||||| | || | || || | |||||||| || Sbjct 11506 CCCTCCTTGTCCTGGATTTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCA 11447 Query 131191 ACGGTAACGGTTTTACCGGTTAG 131213 | ||| | ||| || ||||| || Sbjct 11446 AGGGTGATGGTCTTGCCGGTGAG 11424 >seq180 Length=11059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | || |||||||| || |||||||| || Sbjct 10724 GCCACCACGAAGACGGAGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 10783 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 10784 AAGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 10843 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| ||| ||||| | || | || || | ||||||| Sbjct 10844 AATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGACGACTCGAC 10903 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAG 131213 |||| || | || || ||||| || Sbjct 10904 CTCGAGAGTGATCGTCTTGCCGGTGAG 10930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471990249588480