Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 100 2e-16
seq238 93.3 4e-14
seq180 87.8 2e-12
>seq2686
Length=8065
Score = 100 bits (110), Expect = 2e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || || || || || | || || || || |||| || || ||||| |
Sbjct 6791 AGATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGT 6732
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|||| ||| | ||| | |||| || || || ||||||||||| || || ||||| |
Sbjct 6731 CCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACC 6672
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| || || || ||||| ||| | ||||| ||||||| | || || ||||
Sbjct 6671 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 6612
Query 22397 ACATTCAAAAAGAATCCACC 22416
|||| || || || || |||
Sbjct 6611 ACATCCAGAAGGAGTCGACC 6592
>seq238
Length=11627
Score = 93.3 bits (102), Expect = 4e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| || || || | || ||| | ||| | ||||
Sbjct 11427 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCG 11486
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
||||| || |||||||||||||| || ||||| || || |||||||| || || |||||
Sbjct 11487 AAAATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGCAAG 11546
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
||| | ||||| |||||| |||| || ||||
Sbjct 11547 CAGCTCGAGGACGGCCGCACTCTCTCGGACTACA 11580
>seq180
Length=11059
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || ||| ||||||| || || || | | || ||| | ||| | ||||
Sbjct 10927 ACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGTCG 10868
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||||||||| ||||| || || ||||| || || || || ||
Sbjct 10867 AAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGAAAG 10808
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | ||||| ||||| | || || |||||||| || || || || ||
Sbjct 10807 CAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTAC 10755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419708448807430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |