Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2686 100 2e-16 seq238 93.3 4e-14 seq180 87.8 2e-12 >seq2686 Length=8065 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || || | || || || || |||| || || ||||| | Sbjct 6791 AGATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGT 6732 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | ||| | |||| || || || ||||||||||| || || ||||| | Sbjct 6731 CCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACC 6672 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || || || ||||| ||| | ||||| ||||||| | || || |||| Sbjct 6671 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 6612 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || || || || ||| Sbjct 6611 ACATCCAGAAGGAGTCGACC 6592 >seq238 Length=11627 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| || || || | || ||| | ||| | |||| Sbjct 11427 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCG 11486 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || |||||||||||||| || ||||| || || |||||||| || || ||||| Sbjct 11487 AAAATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGCAAG 11546 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||| | ||||| |||||| |||| || |||| Sbjct 11547 CAGCTCGAGGACGGCCGCACTCTCTCGGACTACA 11580 >seq180 Length=11059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || ||| ||||||| || || || | | || ||| | ||| | |||| Sbjct 10927 ACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGTCG 10868 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| ||||| || || ||||| || || || || || Sbjct 10867 AAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGAAAG 10808 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| ||||| | || || |||||||| || || || || || Sbjct 10807 CAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTAC 10755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419708448807430