Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2988 203 7e-47 seq252 181 2e-40 seq984 120 6e-22 seq3467 104 5e-17 seq2414 91.5 3e-13 >seq2988 Length=9850 Score = 203 bits (224), Expect = 7e-47 Identities = 411/604 (68%), Gaps = 12/604 (2%) Strand=Plus/Minus Query 218506 ATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAG 218565 |||||| || | ||||| || |||||||||| || || |||||| | || | Sbjct 2398 ATCCCCATCTCGGACTTTGTCAACAAGGAGCTGATCCTCTTCTCGATGGCCGACAACATG 2339 Query 218566 CGTTCTATTCCCAGCG-TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 ||||| || |||| || | | || ||||||||||| ||||| ||| || | | | Sbjct 2338 CGTTCGAT-CCCATCGGTTGCCGACGGCCTCAAGCCCGGTCAGCGCAAGGTCATGTACGG 2280 Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAA----ATTAAGGTCGCTCAGTTTTCTGGTTATG 218680 | |||||||| || || |||||| || |||||||| ||| | |||||| | Sbjct 2279 CTGCTTCAAGCGTAATCT----CAAGAAGGAGATCAAGGTCGCGCAGCTCGGTGGTTACG 2224 Query 218681 TATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCA 218740 | ||||| | | | ||||| ||||| || ||||||||| | | ||||||| || Sbjct 2223 TGTCCGAGAACACGGCGTACCACCACGGCGAACAGAGTCTGACTGCTACCATTGTCGGTC 2164 Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800 | |||||| | | ||||||||| |||||||| |||||||| |||||||||||||| | Sbjct 2163 TCGCACAGAAGTTTGTGGGCAGCAACAACATCAACTTGCTCGAGCCCAACGGTCAGTTCG 2104 Query 218801 GTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGT 218860 || | ||| | |||||||||||| ||| || | || || || || || || Sbjct 2103 GTACGCGTATGCAGGGTGGAAAGGACGCTGCCAGCGCGCGTTACATTTTCACCAACACGT 2044 Query 218861 CGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGG 218920 | | |||| ||| |||||| ||| ||||| || ||| |||| || || | | Sbjct 2043 CCGCGATGACCCGCGCTGTGTTCCATCCCGCCGACGACCCGCTTCTTACCTACCTCGTCG 1984 Query 218921 ACGATGGTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTA 218979 | || || | || || |||||||||| || |||| | ||||| | | ||| | Sbjct 1983 AGGACGG-CCAGCGCATCGAGCCCGAGTACTACTTGCCAACCGTTCCGCTGATTCTCATC 1925 Query 218980 AATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAG 219039 ||||| || |||||||||| || || | || ||| | ||||| ||||| ||| Sbjct 1924 AATGGCGCGGATGGTATCGGTACTGGTTGGAGCACTCAGATTCCCAACTACAACCCCGTC 1865 Query 219040 GACATCATTGACAACGTCAAGCGTCTCATATCTGGCAAGGAGATGGTACCGATGTCTCCG 219099 || || |||| ||| | || || || |||| |||||||||| |||||| |||| Sbjct 1864 GATGTCGTTGAGAACCTGCGACGCCTTATGCGTGGCGAGGAGATGGTCCCGATGACTCCA 1805 Query 219100 TGGT 219103 |||| Sbjct 1804 TGGT 1801 >seq252 Length=28045 Score = 181 bits (200), Expect = 2e-40 Identities = 404/603 (67%), Gaps = 10/603 (2%) Strand=Plus/Minus Query 218506 ATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAG 218565 ||||| || |||||||| || |||||||||||||||| |||||| | || | Sbjct 6272 ATCCCTATCTCTGACTTCGTCAACAAGGAGCTCATTCTCTTCTCGATGGCGGACAACATG 6213 Query 218566 CGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC 218625 ||||| |||||| |||| || ||||| ||||| ||||| ||| | | | | | Sbjct 6212 CGTTCCATTCCCTCGGTGGCCGACGGCCTAAAGCCTGGTCAGCGCAAGGTTATGTACGGC 6153 Query 218626 GCATTCAAGCGGAACCTGGTTCAAGAA----ATTAAGGTCGCTCAGTTTTCTGGTTATGT 218681 |||||||| ||||| |||||| ||||||||||| ||| || |||||| || Sbjct 6152 TGCTTCAAGCGTAACCT----CAAGAAGGAGATTAAGGTCGCACAGCTTGGTGGTTACGT 6097 Query 218682 ATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCAT 218741 ||||| | | | |||||| |||||||| |||||| || || | || || || | Sbjct 6096 GTCCGAGAACACGGCCTACCACCACGGTGAACAGAGTTTGACGGCCACGATCGTTGGTCT 6037 Query 218742 GGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 ||| ||| | | ||| ||||| |||||||| |||||||| |||||||||||||| || Sbjct 6036 GGCGCAGAAGTTTGTTGGCAGCAACAACATCAACTTGCTCGAGCCCAACGGTCAGTTCGG 5977 Query 218802 TTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTC 218861 | | ||| | ||| || ||||| ||| || | || || || || || || Sbjct 5976 TACGCGTATGCAGGGCGGCAAGGACGCTGCCAGCGCTCGTTACATTTTCACCAACACCTC 5917 Query 218862 GCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGA 218921 | |||| ||| |||||| | | || || || || |||| || |||| || Sbjct 5916 CGCGATGACCCGCGCTGTGTTCCACCCAGCGGACGACCCACTTCTTACCTACCTTGTTGA 5857 Query 218922 CGATGGTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAA 218980 || || | || || |||||||||| || |||| || ||||| | | ||| | | Sbjct 5856 GGACGG-CCAGCGTATCGAGCCCGAGTACTACTTGCCGACTGTTCCGATGATTCTCATCA 5798 Query 218981 ATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGG 219040 | ||||| | ||||| || || || | ||||| | ||||| ||||| ||| | Sbjct 5797 ACGGTGCGGACGGTATTGGTACCGGTTGGAGTACGCAGATTCCCAACTACAACCCCGTCG 5738 Query 219041 ACATCATTGACAACGTCAAGCGTCTCATATCTGGCAAGGAGATGGTACCGATGTCTCCGT 219100 | || | || ||| | ||| || || ||| ||||| | || |||||| | |||| Sbjct 5737 ATGTCGTGGAGAACTTGCGGCGCCTTATGCGAGGCGAGGAGGTTGTGCCGATGACCCCGT 5678 Query 219101 GGT 219103 ||| Sbjct 5677 GGT 5675 >seq984 Length=2534 Score = 120 bits (132), Expect = 6e-22 Identities = 137/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||| || || |||| |||| |||||||||||| || || Sbjct 1560 GGTCCCAACGGTTCCGGCAAGTCGACTCTCGTCAAGCTCCTTACTGGCGAGACCGAGCCC 1619 Query 280239 A--CTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | || | ||| |||| |||||||| || ||| | || | |||||| || |||||| Sbjct 1620 AACCTCGGCGGTACCGTCTGGAAGCACCCTAACCTCGTCATCGGTTACGTTGCCCAGCAC 1679 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || |||||||||||||| ||||||| |||| ||||||| | | ||||| | ||||| Sbjct 1680 GCCTTCCACCACATCGACCACCACCTTGACAAGACTCCTCTCGAGTACATGCTCTGGCGT 1739 Query 280356 TA 280357 || Sbjct 1740 TA 1741 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 280712 CATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCA 280771 ||| |||||||| || || |||||||||||||| | || |||| || || ||||| Sbjct 2111 CATGCGCGGTCTCTCCGGTGGCCAGAAGGTCAAGGTCGTTCTCGGTGCCGCCACGTGGCG 2170 Query 280772 ACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 | || ||| | ||| |||||||||||| |||||||| |||||||||||| Sbjct 2171 TCGTCCCCACATTATCTGTCTCGACGAGCCCACCAACTACCTGGACCGCGAG 2222 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || |||||||||||||||||||| ||||| | || ||||| || | Sbjct 1077 GGCTCGCTTTCCGGTGGTTGGAAGATGAAGCTCGCCCTTGCGCGTGCCATCCTCTTCAAG 1136 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || || | || || ||||| ||||| ||||||||| | ||| | |||| | ||||| Sbjct 1137 GCTGACATTCTCCTCCTTGACGAGCCCACCAACCACCTCGACGTCGTCAACATCACCTGG 1196 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || || |||||| ||| || | || | || |||| ||||| |||||||| Sbjct 1197 CTCGTCGACTACCTCACCTCGCTCACCAACTGCACGTCGATCATGGTCTCGCACGACTCG 1256 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 1257 GACTTCCT 1264 >seq3467 Length=8863 Score = 104 bits (114), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||||| || || ||||| ||||| |||||||| || || ||||| |||| ||||||||| Sbjct 2682 GGTGTTATCGGCCCCAACGGTGCCGGTAAGTCGACTCTCATCAAGCTCCTCACTGGCGAG 2623 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTG--GAAGCATCCCAACATGCGGATGGCTTACGTCG 280287 ||| ||| ||||| | || || ||||| ||| | || | | |||||||| Sbjct 2622 ACCGTTCCCAACGAGGG--CAGTGTGCACAAGCACCCCGCGCTCCGTGTCGGTTACGTCG 2565 Query 280288 CTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTC 280347 | |||||||| ||||||||||| | | ||||| || | |||| | || ||||| | Sbjct 2564 CACAGCACGCGTTCCACCACATTAACCAGCACCTCGAGAAGACTGCCGTGCAGTACATCC 2505 Query 280348 AGTGGCGCTA 280357 ||||||| || Sbjct 2504 AGTGGCGTTA 2495 >seq2414 Length=19474 Score = 91.5 bits (100), Expect = 3e-13 Identities = 282/430 (66%), Gaps = 15/430 (3%) Strand=Plus/Minus Query 294089 CCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAG 294148 |||| ||||| ||| ||||| |||||||| ||| | |||| | || || | Sbjct 2386 CCTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGG 2327 Query 294149 ACAGGCCAGGGCACTCGTGAGGGTCAAGT-AGAGACCACTGGGCATCAGTCTCCACGCGC 294207 ||||| ||||||||| | ||| || | || | ||| | | | || | ||| || ||| Sbjct 2326 CAAGGCCGGGGCACTCG-GCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGC 2268 Query 294208 TTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCC 294267 |||||||| || || || ||| | ||||| || | || ||||| |||| |||| Sbjct 2267 TTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCC 2208 Query 294268 TCACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGA 294327 | || || || |||||| |||||||| | || ||||| || || || || Sbjct 2207 TTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGG 2148 Query 294328 TACACAGCAAAGG-AC-----CCCTTCCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTG 294381 || | ||||||| || | ||| || || ||||||| | |||| || ||| Sbjct 2147 TAGATGGCAAAGGCACCGGGGCGCTTGTTG---CCGCCCTGGTCGACGTAACGAGCAGTG 2091 Query 294382 GTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCGCGAATC 294441 | || || | ||||| || ||||| || | ||| | ||| ||||| ||| ||| Sbjct 2090 GCATCGTACGCACGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATG 2031 Query 294442 T--CAGCCCCGCGCCCGCGAATGTCGCTCATGTGGAGACCAATGCCACCGCCATACTTGG 294499 | ||||| | | || |||| | |||||||||||||| || ||| || ||||| Sbjct 2030 TACGAGCCCTTGG--CACGGATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGG 1973 Query 294500 ACAACTGGGC 294509 | | ||| || Sbjct 1972 AGATCTGAGC 1963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027786467474302