Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2988 203 7e-47
seq252 181 2e-40
seq984 120 6e-22
seq3467 104 5e-17
seq2414 91.5 3e-13
>seq2988
Length=9850
Score = 203 bits (224), Expect = 7e-47
Identities = 411/604 (68%), Gaps = 12/604 (2%)
Strand=Plus/Minus
Query 218506 ATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAG 218565
|||||| || | ||||| || |||||||||| || || |||||| | || |
Sbjct 2398 ATCCCCATCTCGGACTTTGTCAACAAGGAGCTGATCCTCTTCTCGATGGCCGACAACATG 2339
Query 218566 CGTTCTATTCCCAGCG-TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624
||||| || |||| || | | || ||||||||||| ||||| ||| || | | |
Sbjct 2338 CGTTCGAT-CCCATCGGTTGCCGACGGCCTCAAGCCCGGTCAGCGCAAGGTCATGTACGG 2280
Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAA----ATTAAGGTCGCTCAGTTTTCTGGTTATG 218680
| |||||||| || || |||||| || |||||||| ||| | |||||| |
Sbjct 2279 CTGCTTCAAGCGTAATCT----CAAGAAGGAGATCAAGGTCGCGCAGCTCGGTGGTTACG 2224
Query 218681 TATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCA 218740
| ||||| | | | ||||| ||||| || ||||||||| | | ||||||| ||
Sbjct 2223 TGTCCGAGAACACGGCGTACCACCACGGCGAACAGAGTCTGACTGCTACCATTGTCGGTC 2164
Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800
| |||||| | | ||||||||| |||||||| |||||||| |||||||||||||| |
Sbjct 2163 TCGCACAGAAGTTTGTGGGCAGCAACAACATCAACTTGCTCGAGCCCAACGGTCAGTTCG 2104
Query 218801 GTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGT 218860
|| | ||| | |||||||||||| ||| || | || || || || || ||
Sbjct 2103 GTACGCGTATGCAGGGTGGAAAGGACGCTGCCAGCGCGCGTTACATTTTCACCAACACGT 2044
Query 218861 CGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGG 218920
| | |||| ||| |||||| ||| ||||| || ||| |||| || || | |
Sbjct 2043 CCGCGATGACCCGCGCTGTGTTCCATCCCGCCGACGACCCGCTTCTTACCTACCTCGTCG 1984
Query 218921 ACGATGGTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTA 218979
| || || | || || |||||||||| || |||| | ||||| | | ||| |
Sbjct 1983 AGGACGG-CCAGCGCATCGAGCCCGAGTACTACTTGCCAACCGTTCCGCTGATTCTCATC 1925
Query 218980 AATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAG 219039
||||| || |||||||||| || || | || ||| | ||||| ||||| |||
Sbjct 1924 AATGGCGCGGATGGTATCGGTACTGGTTGGAGCACTCAGATTCCCAACTACAACCCCGTC 1865
Query 219040 GACATCATTGACAACGTCAAGCGTCTCATATCTGGCAAGGAGATGGTACCGATGTCTCCG 219099
|| || |||| ||| | || || || |||| |||||||||| |||||| ||||
Sbjct 1864 GATGTCGTTGAGAACCTGCGACGCCTTATGCGTGGCGAGGAGATGGTCCCGATGACTCCA 1805
Query 219100 TGGT 219103
||||
Sbjct 1804 TGGT 1801
>seq252
Length=28045
Score = 181 bits (200), Expect = 2e-40
Identities = 404/603 (67%), Gaps = 10/603 (2%)
Strand=Plus/Minus
Query 218506 ATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAG 218565
||||| || |||||||| || |||||||||||||||| |||||| | || |
Sbjct 6272 ATCCCTATCTCTGACTTCGTCAACAAGGAGCTCATTCTCTTCTCGATGGCGGACAACATG 6213
Query 218566 CGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC 218625
||||| |||||| |||| || ||||| ||||| ||||| ||| | | | | |
Sbjct 6212 CGTTCCATTCCCTCGGTGGCCGACGGCCTAAAGCCTGGTCAGCGCAAGGTTATGTACGGC 6153
Query 218626 GCATTCAAGCGGAACCTGGTTCAAGAA----ATTAAGGTCGCTCAGTTTTCTGGTTATGT 218681
|||||||| ||||| |||||| ||||||||||| ||| || |||||| ||
Sbjct 6152 TGCTTCAAGCGTAACCT----CAAGAAGGAGATTAAGGTCGCACAGCTTGGTGGTTACGT 6097
Query 218682 ATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCAT 218741
||||| | | | |||||| |||||||| |||||| || || | || || || |
Sbjct 6096 GTCCGAGAACACGGCCTACCACCACGGTGAACAGAGTTTGACGGCCACGATCGTTGGTCT 6037
Query 218742 GGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801
||| ||| | | ||| ||||| |||||||| |||||||| |||||||||||||| ||
Sbjct 6036 GGCGCAGAAGTTTGTTGGCAGCAACAACATCAACTTGCTCGAGCCCAACGGTCAGTTCGG 5977
Query 218802 TTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTC 218861
| | ||| | ||| || ||||| ||| || | || || || || || ||
Sbjct 5976 TACGCGTATGCAGGGCGGCAAGGACGCTGCCAGCGCTCGTTACATTTTCACCAACACCTC 5917
Query 218862 GCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGA 218921
| |||| ||| |||||| | | || || || || |||| || |||| ||
Sbjct 5916 CGCGATGACCCGCGCTGTGTTCCACCCAGCGGACGACCCACTTCTTACCTACCTTGTTGA 5857
Query 218922 CGATGGTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAA 218980
|| || | || || |||||||||| || |||| || ||||| | | ||| | |
Sbjct 5856 GGACGG-CCAGCGTATCGAGCCCGAGTACTACTTGCCGACTGTTCCGATGATTCTCATCA 5798
Query 218981 ATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGG 219040
| ||||| | ||||| || || || | ||||| | ||||| ||||| ||| |
Sbjct 5797 ACGGTGCGGACGGTATTGGTACCGGTTGGAGTACGCAGATTCCCAACTACAACCCCGTCG 5738
Query 219041 ACATCATTGACAACGTCAAGCGTCTCATATCTGGCAAGGAGATGGTACCGATGTCTCCGT 219100
| || | || ||| | ||| || || ||| ||||| | || |||||| | ||||
Sbjct 5737 ATGTCGTGGAGAACTTGCGGCGCCTTATGCGAGGCGAGGAGGTTGTGCCGATGACCCCGT 5678
Query 219101 GGT 219103
|||
Sbjct 5677 GGT 5675
>seq984
Length=2534
Score = 120 bits (132), Expect = 6e-22
Identities = 137/182 (75%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|| ||||| ||| | || ||||| || || |||| |||| |||||||||||| || ||
Sbjct 1560 GGTCCCAACGGTTCCGGCAAGTCGACTCTCGTCAAGCTCCTTACTGGCGAGACCGAGCCC 1619
Query 280239 A--CTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295
| || | ||| |||| |||||||| || ||| | || | |||||| || ||||||
Sbjct 1620 AACCTCGGCGGTACCGTCTGGAAGCACCCTAACCTCGTCATCGGTTACGTTGCCCAGCAC 1679
Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355
|| |||||||||||||| ||||||| |||| ||||||| | | ||||| | |||||
Sbjct 1680 GCCTTCCACCACATCGACCACCACCTTGACAAGACTCCTCTCGAGTACATGCTCTGGCGT 1739
Query 280356 TA 280357
||
Sbjct 1740 TA 1741
Score = 89.7 bits (98), Expect = 1e-12
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 280712 CATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCA 280771
||| |||||||| || || |||||||||||||| | || |||| || || |||||
Sbjct 2111 CATGCGCGGTCTCTCCGGTGGCCAGAAGGTCAAGGTCGTTCTCGGTGCCGCCACGTGGCG 2170
Query 280772 ACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823
| || ||| | ||| |||||||||||| |||||||| ||||||||||||
Sbjct 2171 TCGTCCCCACATTATCTGTCTCGACGAGCCCACCAACTACCTGGACCGCGAG 2222
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|| || || || |||||||||||||||||||| ||||| | || ||||| || |
Sbjct 1077 GGCTCGCTTTCCGGTGGTTGGAAGATGAAGCTCGCCCTTGCGCGTGCCATCCTCTTCAAG 1136
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|| || | || || ||||| ||||| ||||||||| | ||| | |||| | |||||
Sbjct 1137 GCTGACATTCTCCTCCTTGACGAGCCCACCAACCACCTCGACGTCGTCAACATCACCTGG 1196
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| || |||||| ||| || | || | || |||| ||||| ||||||||
Sbjct 1197 CTCGTCGACTACCTCACCTCGCTCACCAACTGCACGTCGATCATGGTCTCGCACGACTCG 1256
Query 279879 GGCTTCCT 279886
| ||||||
Sbjct 1257 GACTTCCT 1264
>seq3467
Length=8863
Score = 104 bits (114), Expect = 5e-17
Identities = 138/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
||||| || || ||||| ||||| |||||||| || || ||||| |||| |||||||||
Sbjct 2682 GGTGTTATCGGCCCCAACGGTGCCGGTAAGTCGACTCTCATCAAGCTCCTCACTGGCGAG 2623
Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTG--GAAGCATCCCAACATGCGGATGGCTTACGTCG 280287
||| ||| ||||| | || || ||||| ||| | || | | ||||||||
Sbjct 2622 ACCGTTCCCAACGAGGG--CAGTGTGCACAAGCACCCCGCGCTCCGTGTCGGTTACGTCG 2565
Query 280288 CTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTC 280347
| |||||||| ||||||||||| | | ||||| || | |||| | || ||||| |
Sbjct 2564 CACAGCACGCGTTCCACCACATTAACCAGCACCTCGAGAAGACTGCCGTGCAGTACATCC 2505
Query 280348 AGTGGCGCTA 280357
||||||| ||
Sbjct 2504 AGTGGCGTTA 2495
>seq2414
Length=19474
Score = 91.5 bits (100), Expect = 3e-13
Identities = 282/430 (66%), Gaps = 15/430 (3%)
Strand=Plus/Minus
Query 294089 CCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAG 294148
|||| ||||| ||| ||||| |||||||| ||| | |||| | || || |
Sbjct 2386 CCTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGG 2327
Query 294149 ACAGGCCAGGGCACTCGTGAGGGTCAAGT-AGAGACCACTGGGCATCAGTCTCCACGCGC 294207
||||| ||||||||| | ||| || | || | ||| | | | || | ||| || |||
Sbjct 2326 CAAGGCCGGGGCACTCG-GCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGC 2268
Query 294208 TTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCC 294267
|||||||| || || || ||| | ||||| || | || ||||| |||| ||||
Sbjct 2267 TTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCC 2208
Query 294268 TCACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGA 294327
| || || || |||||| |||||||| | || ||||| || || || ||
Sbjct 2207 TTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGG 2148
Query 294328 TACACAGCAAAGG-AC-----CCCTTCCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTG 294381
|| | ||||||| || | ||| || || ||||||| | |||| || |||
Sbjct 2147 TAGATGGCAAAGGCACCGGGGCGCTTGTTG---CCGCCCTGGTCGACGTAACGAGCAGTG 2091
Query 294382 GTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCGCGAATC 294441
| || || | ||||| || ||||| || | ||| | ||| ||||| ||| |||
Sbjct 2090 GCATCGTACGCACGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATG 2031
Query 294442 T--CAGCCCCGCGCCCGCGAATGTCGCTCATGTGGAGACCAATGCCACCGCCATACTTGG 294499
| ||||| | | || |||| | |||||||||||||| || ||| || |||||
Sbjct 2030 TACGAGCCCTTGG--CACGGATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGG 1973
Query 294500 ACAACTGGGC 294509
| | ||| ||
Sbjct 1972 AGATCTGAGC 1963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027786467474302
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