Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2414 547 1e-150 seq1321 190 4e-43 >seq2414 Length=19474 Score = 547 bits (606), Expect = 1e-150 Identities = 1229/1816 (68%), Gaps = 65/1816 (4%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA 243932 || |||||| |||||||||||||||| ||| | |||| || || ||||| | | ||||| Sbjct 3381 GATGTTGAGCGACTGGCTCTGGTCGATGAACG-CGCCACGGTCGGCGGCGAGGTCGATGA 3323 Query 243933 GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACC 243992 | ||||||| || ||||| | ||||||||||||||| ||||| | || |||| Sbjct 3322 CGGCCTTCTGCGAAATCTCCCAGACCGTCTTGTAGATGGCCTTGATCTCGTCCGGGATG- 3264 Query 243993 CTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTT 244050 || | |||||||| | ||| || || | |||||| || | |||||| |||| Sbjct 3263 -TTGGGAATGTTCTGGATCGAACCACGGTTGGCGATGATGAGGTTCTTCATGTTGTCGTC 3205 Query 244051 CCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC-TGTTCA--CCACCTGAAACTC 244107 ||| | ||| | | ||| | | || |||| ||| || || | ||||| || || Sbjct 3204 CCAGATGCCGAGGTTGATCAG-GTCACG--CAGGAGCCATGGGCAGACAACCTGGAAGTC 3148 Query 244108 TCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTT 244167 ||||| ||||| ||||| |||||| | | || ||||||| || ||| | Sbjct 3147 ACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGCTCGAAGCACTCGTTCCA 3088 Query 244168 GCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCAC 244227 ||| || ||||||| || ||||| |||||||| | || || || ||| | ||| Sbjct 3087 GCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTTGCGCAC 3028 Query 244228 GCCGTGC-CTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC 244285 |||||| | ||| |||| | | ||| | ||||||||| | | | | ||| | Sbjct 3027 ACCGTGCTCGCTGATCTGCGCA--CGGAGAGGGGCCCAGTCCCAGAGGTCGGT-AGGAGC 2971 Query 244286 TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCG 244345 || |||||| | ||| ||||| ||| |||| | || ||| ||||||| Sbjct 2970 ACG--------GCCCCAGAGGTCGAACTGGAGCTTGCCCTGGGAGATGGGCGAGCCCTCG 2919 Query 244346 TAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAG 244405 || | ||||| ||| || ||| |||| | | | ||||||||||||| | Sbjct 2918 TACGAGGGGTACTTGCCGAGCTCCTTGGCAAGCTCGCTGGACGACTCGAGGGCGGCGTGG 2859 Query 244406 TAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGAT 244464 |||||||||||||||||| | ||| | || || |||| | || || |||||| || Sbjct 2858 TAGATGGTCTCGAAGATCTTGAGGTTGAGCTCACGAGCCTCAGGCG-AGTCGAAGGGCAT 2800 Query 244465 GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCG 244524 || | ||||||| |||||| || ||||| || |||| |||| ||| | ||| || Sbjct 2799 GCGGAGAGCCATGAAGGTGTCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCG 2740 Query 244525 CTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGA 244583 | |||||||| || | || | | |||||||| |||||| ||| |||| || || Sbjct 2739 CATGTTGGAGTTGCGAGCCTCCTTG-ACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGA 2681 Query 244584 GGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGAT 244643 |||| ||||| | | || ||| |||| || |||||||| | || Sbjct 2680 GGTTCTTGGTGACGACCTTGGTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCT---GAG 2624 Query 244644 CCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGG 244703 |||| | | ||||| || || || | ||| ||||||||||||| Sbjct 2623 CCTCAAAGTCG---------ACAAAGGCGGGAAGAGCAATCGAGGCAAGGTTGCAGACGG 2573 Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 | ||||| || | | ||||| | ||||| ||||||||||| ||||||||| Sbjct 2572 CGACCTCGTCAGGCGACGAGTACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGG 2513 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 |||| |||||||| || || ||||||| |||| |||||||||||||||||||||||| | Sbjct 2512 TGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGAC 2453 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 | || ||||| ||| || |||||| | ||| || | | |||||||| ||| Sbjct 2452 CACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAACCAAAGCTTCTGAGCCTTGATGGTCT 2393 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAG- 244942 ||||| |||||||||| |||||| ||| || ||||||||| || || Sbjct 2392 TGCGACCCTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTGCTCGAACTCCT---CCGAGT 2336 Query 244943 --ACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCT 245000 || ||| | |||||||||||| || ||||||||||| |||| |||||| | ||| Sbjct 2335 GGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCT 2276 Query 245001 TGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT 245060 ||| | || ||||||||||||||||||||||||||| | ||||||||| | || | | Sbjct 2275 CGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCA 2216 Query 245061 GCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGG 245120 ||| ||| ||| |||||| | || || | ||||| ||||||||| ||||||| | Sbjct 2215 TCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAG 2156 Query 245121 GCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCT 245180 |||| | ||||| || | ||| ||||| ||||||||||| |||||||| | | | Sbjct 2155 GCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGCCCTGGTCGA----CGTAA 2100 Query 245181 CGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTG 245236 ||||| || | | | || || | || || || ||||| |||| |||||||| Sbjct 2099 CGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGTA 2040 Query 245237 CCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCG 245296 || ||||| | ||||||| | | || |||| |||| | || | |||||||| Sbjct 2039 CCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCAATACCGCCGGCA 1980 Query 245297 TGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGAC 245356 ||||||||| | |||||| |||||| |||||| ||||| || || ||| | Sbjct 1979 GTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCCATCAATCGAGTCGTCC 1920 Query 245357 TTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGA 245416 |||||| || || ||||| || |||| ||| | | || | | | |||||| || Sbjct 1919 TTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGG 1860 Query 245417 GTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCG 245476 || || |||||||| |||||||| ||| | || || |||| || | | | Sbjct 1859 GTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTATAGGTCTCGATGACACGG 1800 Query 245477 TCGATGTTGTCGCCGTGGAT-CTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCT 245534 |||||||||||||||||||| | | || | || | ||| || ||||||| ||||| || Sbjct 1799 TCGATGTTGTCGCCGTGGATACCGACGGACACA-CGCATAAGCATGTGCTGCGGGCG-CT 1742 Query 245535 CGATG--GGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAA 245592 || | | || | | | | ||| | |||||| |||||||| |||||||| || || Sbjct 1741 CGGCGACCTTGCCACCGATGC--GGAGGAGGTAGGAACGCTCGAGAGTCTTGAAGCCGAA 1684 Query 245593 GTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTCGGCGTGCTT 245652 | | ||| ||||| || || ||| ||| | ||| || || |||||| Sbjct 1683 GAAGTTGTAAGAGAAGTCACGGTCGTAGATGATGGCCGAGTCAAGAACATCCTTGTGCTT 1624 Query 245653 C-TGACTGACCTCGTA 245667 | ||| |||||||||| Sbjct 1623 CATGA-TGACCTCGTA 1609 >seq1321 Length=24731 Score = 190 bits (210), Expect = 4e-43 Identities = 260/354 (73%), Gaps = 12/354 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| ||||||||| |||||||||||||| | ||| | || || | Sbjct 18982 CCCTGCATCCGGAAGAAGGCCGACTGGGCGCTCAAGTACATC---ACACCAGATATGCCC 19038 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 ||| || | | ||| | |||||| | || ||||||||||||||||||||| | ||| Sbjct 19039 TTCCGCACGCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTC 19098 Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || ||||||||||||||||| || ||| | ||||| ||| ||||||||||| ||||| Sbjct 19099 GCGGCCATCTTCTGGCTCAAGAAGCGTGGTCT-GATGCGCGGCCTCACCTTCTCCAACGA 19157 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||| | |||||||| |||| | ||||| ||||||||||||| | | | Sbjct 19158 GCTCATCTCGCGCGACGAGGGCATGCACACCGACTTCGCCTGCCTCCTGTACCAG---TA 19214 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCG-GGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 ||| ||||| | ||| | ||||| ||| | |||| || ||||||| || |||| Sbjct 19215 CCTGCGGCACCGGTGCTCCCA-GAGCGAGGTGCATCGCATCGTCTCGGAGGCAGTCGAGA 19273 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAAC 42983 |||||||||||||||| || | | || ||| || ||||| ||||||| ||| Sbjct 19274 TCGAGAAGGAGTTCCTGACAGACGCCCT-CCCATGCGCCCTGATCGGCATCAAC 19326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944294084194720