Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 547 1e-150
seq1321 190 4e-43
>seq2414
Length=19474
Score = 547 bits (606), Expect = 1e-150
Identities = 1229/1816 (68%), Gaps = 65/1816 (4%)
Strand=Plus/Minus
Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA 243932
|| |||||| |||||||||||||||| ||| | |||| || || ||||| | | |||||
Sbjct 3381 GATGTTGAGCGACTGGCTCTGGTCGATGAACG-CGCCACGGTCGGCGGCGAGGTCGATGA 3323
Query 243933 GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACC 243992
| ||||||| || ||||| | ||||||||||||||| ||||| | || ||||
Sbjct 3322 CGGCCTTCTGCGAAATCTCCCAGACCGTCTTGTAGATGGCCTTGATCTCGTCCGGGATG- 3264
Query 243993 CTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTT 244050
|| | |||||||| | ||| || || | |||||| || | |||||| ||||
Sbjct 3263 -TTGGGAATGTTCTGGATCGAACCACGGTTGGCGATGATGAGGTTCTTCATGTTGTCGTC 3205
Query 244051 CCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC-TGTTCA--CCACCTGAAACTC 244107
||| | ||| | | ||| | | || |||| ||| || || | ||||| || ||
Sbjct 3204 CCAGATGCCGAGGTTGATCAG-GTCACG--CAGGAGCCATGGGCAGACAACCTGGAAGTC 3148
Query 244108 TCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTT 244167
||||| ||||| ||||| |||||| | | || ||||||| || ||| |
Sbjct 3147 ACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGCTCGAAGCACTCGTTCCA 3088
Query 244168 GCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCAC 244227
||| || ||||||| || ||||| |||||||| | || || || ||| | |||
Sbjct 3087 GCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTTGCGCAC 3028
Query 244228 GCCGTGC-CTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC 244285
|||||| | ||| |||| | | ||| | ||||||||| | | | | ||| |
Sbjct 3027 ACCGTGCTCGCTGATCTGCGCA--CGGAGAGGGGCCCAGTCCCAGAGGTCGGT-AGGAGC 2971
Query 244286 TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCG 244345
|| |||||| | ||| ||||| ||| |||| | || ||| |||||||
Sbjct 2970 ACG--------GCCCCAGAGGTCGAACTGGAGCTTGCCCTGGGAGATGGGCGAGCCCTCG 2919
Query 244346 TAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAG 244405
|| | ||||| ||| || ||| |||| | | | ||||||||||||| |
Sbjct 2918 TACGAGGGGTACTTGCCGAGCTCCTTGGCAAGCTCGCTGGACGACTCGAGGGCGGCGTGG 2859
Query 244406 TAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGAT 244464
|||||||||||||||||| | ||| | || || |||| | || || |||||| ||
Sbjct 2858 TAGATGGTCTCGAAGATCTTGAGGTTGAGCTCACGAGCCTCAGGCG-AGTCGAAGGGCAT 2800
Query 244465 GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCG 244524
|| | ||||||| |||||| || ||||| || |||| |||| ||| | ||| ||
Sbjct 2799 GCGGAGAGCCATGAAGGTGTCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCG 2740
Query 244525 CTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGA 244583
| |||||||| || | || | | |||||||| |||||| ||| |||| || ||
Sbjct 2739 CATGTTGGAGTTGCGAGCCTCCTTG-ACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGA 2681
Query 244584 GGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGAT 244643
|||| ||||| | | || ||| |||| || |||||||| | ||
Sbjct 2680 GGTTCTTGGTGACGACCTTGGTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCT---GAG 2624
Query 244644 CCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGG 244703
|||| | | ||||| || || || | ||| |||||||||||||
Sbjct 2623 CCTCAAAGTCG---------ACAAAGGCGGGAAGAGCAATCGAGGCAAGGTTGCAGACGG 2573
Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763
| ||||| || | | ||||| | ||||| ||||||||||| |||||||||
Sbjct 2572 CGACCTCGTCAGGCGACGAGTACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGG 2513
Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823
|||| |||||||| || || ||||||| |||| |||||||||||||||||||||||| |
Sbjct 2512 TGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGAC 2453
Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883
| || ||||| ||| || |||||| | ||| || | | |||||||| |||
Sbjct 2452 CACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAACCAAAGCTTCTGAGCCTTGATGGTCT 2393
Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAG- 244942
||||| |||||||||| |||||| ||| || ||||||||| || ||
Sbjct 2392 TGCGACCCTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTGCTCGAACTCCT---CCGAGT 2336
Query 244943 --ACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCT 245000
|| ||| | |||||||||||| || ||||||||||| |||| |||||| | |||
Sbjct 2335 GGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCT 2276
Query 245001 TGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT 245060
||| | || ||||||||||||||||||||||||||| | ||||||||| | || | |
Sbjct 2275 CGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCA 2216
Query 245061 GCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGG 245120
||| ||| ||| |||||| | || || | ||||| ||||||||| ||||||| |
Sbjct 2215 TCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAG 2156
Query 245121 GCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCT 245180
|||| | ||||| || | ||| ||||| ||||||||||| |||||||| | | |
Sbjct 2155 GCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGCCCTGGTCGA----CGTAA 2100
Query 245181 CGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTG 245236
||||| || | | | || || | || || || ||||| |||| ||||||||
Sbjct 2099 CGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGTA 2040
Query 245237 CCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCG 245296
|| ||||| | ||||||| | | || |||| |||| | || | ||||||||
Sbjct 2039 CCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCAATACCGCCGGCA 1980
Query 245297 TGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGAC 245356
||||||||| | |||||| |||||| |||||| ||||| || || ||| |
Sbjct 1979 GTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCCATCAATCGAGTCGTCC 1920
Query 245357 TTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGA 245416
|||||| || || ||||| || |||| ||| | | || | | | |||||| ||
Sbjct 1919 TTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGG 1860
Query 245417 GTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCG 245476
|| || |||||||| |||||||| ||| | || || |||| || | | |
Sbjct 1859 GTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTATAGGTCTCGATGACACGG 1800
Query 245477 TCGATGTTGTCGCCGTGGAT-CTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCT 245534
|||||||||||||||||||| | | || | || | ||| || ||||||| ||||| ||
Sbjct 1799 TCGATGTTGTCGCCGTGGATACCGACGGACACA-CGCATAAGCATGTGCTGCGGGCG-CT 1742
Query 245535 CGATG--GGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAA 245592
|| | | || | | | | ||| | |||||| |||||||| |||||||| || ||
Sbjct 1741 CGGCGACCTTGCCACCGATGC--GGAGGAGGTAGGAACGCTCGAGAGTCTTGAAGCCGAA 1684
Query 245593 GTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTCGGCGTGCTT 245652
| | ||| ||||| || || ||| ||| | ||| || || ||||||
Sbjct 1683 GAAGTTGTAAGAGAAGTCACGGTCGTAGATGATGGCCGAGTCAAGAACATCCTTGTGCTT 1624
Query 245653 C-TGACTGACCTCGTA 245667
| ||| ||||||||||
Sbjct 1623 CATGA-TGACCTCGTA 1609
>seq1321
Length=24731
Score = 190 bits (210), Expect = 4e-43
Identities = 260/354 (73%), Gaps = 12/354 (3%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||||||| ||||||||| |||||||||||||| | ||| | || || |
Sbjct 18982 CCCTGCATCCGGAAGAAGGCCGACTGGGCGCTCAAGTACATC---ACACCAGATATGCCC 19038
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
||| || | | ||| | |||||| | || ||||||||||||||||||||| | |||
Sbjct 19039 TTCCGCACGCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTC 19098
Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811
|| ||||||||||||||||| || ||| | ||||| ||| ||||||||||| |||||
Sbjct 19099 GCGGCCATCTTCTGGCTCAAGAAGCGTGGTCT-GATGCGCGGCCTCACCTTCTCCAACGA 19157
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871
|||||| | |||||||| |||| | ||||| ||||||||||||| | | |
Sbjct 19158 GCTCATCTCGCGCGACGAGGGCATGCACACCGACTTCGCCTGCCTCCTGTACCAG---TA 19214
Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCG-GGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930
||| ||||| | ||| | ||||| ||| | |||| || ||||||| || ||||
Sbjct 19215 CCTGCGGCACCGGTGCTCCCA-GAGCGAGGTGCATCGCATCGTCTCGGAGGCAGTCGAGA 19273
Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAAC 42983
|||||||||||||||| || | | || ||| || ||||| ||||||| |||
Sbjct 19274 TCGAGAAGGAGTTCCTGACAGACGCCCT-CCCATGCGCCCTGATCGGCATCAAC 19326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944294084194720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |