Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 219 5e-52
seq1321 107 2e-18
seq400 95.1 1e-14
seq252 91.5 2e-13
>seq2414
Length=19474
Score = 219 bits (242), Expect = 5e-52
Identities = 679/1041 (65%), Gaps = 31/1041 (3%)
Strand=Plus/Minus
Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346
|| |||||||| || |||||||| || | ||||| || | ||| || || || |||||
Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721
Query 114347 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406
|| ||||| || | || | | ||| ||| | || || |||||||| |||||
Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661
Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 114466
||||| || || ||||| | | | || || | ||| ||| | |||| | |||
Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601
Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526
|| || || || || || || || || | | ||| || | |||||| || ||
Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATC 2541
Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586
|| || || | || || ||| |||||||| | || || || || ||||| | |||
Sbjct 2540 TCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTG 2481
Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 114646
|| |||||||| |||||| | || || ||||| || || | || ||| |||||
Sbjct 2480 GCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCG 2421
Query 114647 TTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTA 114699
||| | | || | | || | ||| ||| || |||| |||| ||||||
Sbjct 2420 AACCAAAGCTTCTGAGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCGCTCTCGTA 2368
Query 114700 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATC 114759
||| ||| || || ||||| || | | || | || || || || |
Sbjct 2367 CTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGC 2308
Query 114760 TGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGAT 114819
||||| | ||| | ||| | || || |||| |||||||||||||||||||| |||||
Sbjct 2307 GGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGAT 2248
Query 114820 CCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGC 114877
|||||| || ||||||| || || || || ||| || | || || || ||
Sbjct 2247 CCAGAGGGCGTAGAAGAGGTCACGG--GCACGCATCTCCTCCTTGCCGTGGTTCTTGCGG 2190
Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC- 114936
| || | ||||| | || || |||||||| || || ||||| | || | | ||
Sbjct 2189 AGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCG 2130
Query 114937 -----CTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991
||| | | || |||||| || || | || ||||||| | | || |||
Sbjct 2129 GGGCGCTT--GTTG-CCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGC 2073
Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTC 115049
|| |||| |||||| | || | || || || || ||| ||||| | | |||| |
Sbjct 2072 ATGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCAC 2015
Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109
|| | |||||||| | ||||||||| || || ||| ||||| || ||||| |
Sbjct 2014 GGATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCT 1955
Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCG 115169
|||| || ||||||| || || |||||||| |||| | |||| ||||||||| |
Sbjct 1954 TGAGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATG 1895
Query 115170 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 115229
|||| || | || |||||||||||||||||||| || | |||||| |||| |
Sbjct 1894 ACATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGC 1835
Query 115230 CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 115289
| ||||| | |||||||| | ||| | |||| || ||||| |||||||
Sbjct 1834 GCTCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGA 1775
Query 115290 TCGAGACCCGCATAAACATGT 115310
|| || ||||||| |||||
Sbjct 1774 CGGACACACGCATAAGCATGT 1754
>seq1321
Length=24731
Score = 107 bits (118), Expect = 2e-18
Identities = 103/132 (78%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124
|||||||| || |||||||| || || |||||| || || |||| ||||| ||||||
Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119
Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184
|| | |||||| || || ||||| |||||||||||||| ||||| |||||||| ||
Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059
Query 126185 GCAAAGAGACGC 126196
|| | ||||||
Sbjct 19058 GCGATCAGACGC 19047
>seq400
Length=29784
Score = 95.1 bits (104), Expect = 1e-14
Identities = 164/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATA-CACGGTTGATTTTCACGGGCAA 11015
|||||||| |||||| || || |||||||| ||||| || || | | ||| | |
Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTCCTAGCCTG 15554
Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075
| |||||| ||| || || | | || ||||||||| |||||||| || || || | ||
Sbjct 15555 CG-CAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613
Query 11076 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135
|||| || ||||||||| |||| ||||| || |||| ||| |||||||
Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673
Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 11191
|||| || || || || || | || | ||| || || || ||| ||||||||
Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729
>seq252
Length=28045
Score = 91.5 bits (100), Expect = 2e-13
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 172021 TTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCTTCA 172079
||||||||| |||||||||| || || | || || || |||| |||||| ||||| |
Sbjct 6066 TTCACCGTGGTGGTAGGCCGTGTTCTCGGACACGTAA-CCACCAAGCTGTGCGACCTTAA 6124
Query 172080 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGA 172139
|||| | ||||||||| | |||||| | ||||| ||||| | ||| |||||| |
Sbjct 6125 TCTCCTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTA 6184
Query 172140 GGCCGTCGGCCA 172151
||||||||||||
Sbjct 6185 GGCCGTCGGCCA 6196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597325061431760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |