Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2414 219 5e-52 seq1321 107 2e-18 seq400 95.1 1e-14 seq252 91.5 2e-13 >seq2414 Length=19474 Score = 219 bits (242), Expect = 5e-52 Identities = 679/1041 (65%), Gaps = 31/1041 (3%) Strand=Plus/Minus Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346 || |||||||| || |||||||| || | ||||| || | ||| || || || ||||| Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721 Query 114347 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406 || ||||| || | || | | ||| ||| | || || |||||||| ||||| Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661 Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 114466 ||||| || || ||||| | | | || || | ||| ||| | |||| | ||| Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601 Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526 || || || || || || || || || | | ||| || | |||||| || || Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATC 2541 Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || || || | || || ||| |||||||| | || || || || ||||| | ||| Sbjct 2540 TCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTG 2481 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 114646 || |||||||| |||||| | || || ||||| || || | || ||| ||||| Sbjct 2480 GCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCG 2421 Query 114647 TTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTA 114699 ||| | | || | | || | ||| ||| || |||| |||| |||||| Sbjct 2420 AACCAAAGCTTCTGAGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCGCTCTCGTA 2368 Query 114700 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATC 114759 ||| ||| || || ||||| || | | || | || || || || | Sbjct 2367 CTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGC 2308 Query 114760 TGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGAT 114819 ||||| | ||| | ||| | || || |||| |||||||||||||||||||| ||||| Sbjct 2307 GGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGAT 2248 Query 114820 CCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGC 114877 |||||| || ||||||| || || || || ||| || | || || || || Sbjct 2247 CCAGAGGGCGTAGAAGAGGTCACGG--GCACGCATCTCCTCCTTGCCGTGGTTCTTGCGG 2190 Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC- 114936 | || | ||||| | || || |||||||| || || ||||| | || | | || Sbjct 2189 AGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCG 2130 Query 114937 -----CTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991 ||| | | || |||||| || || | || ||||||| | | || ||| Sbjct 2129 GGGCGCTT--GTTG-CCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGC 2073 Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTC 115049 || |||| |||||| | || | || || || || ||| ||||| | | |||| | Sbjct 2072 ATGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCAC 2015 Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109 || | |||||||| | ||||||||| || || ||| ||||| || ||||| | Sbjct 2014 GGATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCT 1955 Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCG 115169 |||| || ||||||| || || |||||||| |||| | |||| ||||||||| | Sbjct 1954 TGAGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATG 1895 Query 115170 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 115229 |||| || | || |||||||||||||||||||| || | |||||| |||| | Sbjct 1894 ACATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGC 1835 Query 115230 CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 115289 | ||||| | |||||||| | ||| | |||| || ||||| ||||||| Sbjct 1834 GCTCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGA 1775 Query 115290 TCGAGACCCGCATAAACATGT 115310 || || ||||||| ||||| Sbjct 1774 CGGACACACGCATAAGCATGT 1754 >seq1321 Length=24731 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || |||||||| || || |||||| || || |||| ||||| |||||| Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || || ||||| |||||||||||||| ||||| |||||||| || Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059 Query 126185 GCAAAGAGACGC 126196 || | |||||| Sbjct 19058 GCGATCAGACGC 19047 >seq400 Length=29784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATA-CACGGTTGATTTTCACGGGCAA 11015 |||||||| |||||| || || |||||||| ||||| || || | | ||| | | Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTCCTAGCCTG 15554 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | |||||| ||| || || | | || ||||||||| |||||||| || || || | || Sbjct 15555 CG-CAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613 Query 11076 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135 |||| || ||||||||| |||| ||||| || |||| ||| ||||||| Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673 Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 11191 |||| || || || || || | || | ||| || || || ||| |||||||| Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729 >seq252 Length=28045 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 172021 TTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCTTCA 172079 ||||||||| |||||||||| || || | || || || |||| |||||| ||||| | Sbjct 6066 TTCACCGTGGTGGTAGGCCGTGTTCTCGGACACGTAA-CCACCAAGCTGTGCGACCTTAA 6124 Query 172080 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGA 172139 |||| | ||||||||| | |||||| | ||||| ||||| | ||| |||||| | Sbjct 6125 TCTCCTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTA 6184 Query 172140 GGCCGTCGGCCA 172151 |||||||||||| Sbjct 6185 GGCCGTCGGCCA 6196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597325061431760