Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2686 129 6e-25 seq180 87.8 2e-12 >seq2686 Length=8065 Score = 129 bits (142), Expect = 6e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| |||||||| Sbjct 6598 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 6657 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 6658 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 6716 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| | Sbjct 6717 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 6776 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 6777 CGAAGATCTGCAT 6789 >seq180 Length=11059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 10760 CTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCGAA 10819 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | | |||||||||| ||| || |||| ||| Sbjct 10820 GATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 10878 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187 | | | ||||| ||| || || |||| ||||| || ||||| || || Sbjct 10879 TGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAG 10930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543186848008480