Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 129 6e-25
seq180 87.8 2e-12
>seq2686
Length=8065
Score = 129 bits (142), Expect = 6e-25
Identities = 146/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | || || || |||| || |||||||| ||||||||
Sbjct 6598 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 6657
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||||| || | || |||||||||| ||| || |||| |||
Sbjct 6658 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 6716
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| |
Sbjct 6717 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 6776
Query 42196 CAAAGATTTGCAT 42208
| ||||| |||||
Sbjct 6777 CGAAGATCTGCAT 6789
>seq180
Length=11059
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/172 (72%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | || || || |||| || |||||||| || |||||
Sbjct 10760 CTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCGAA 10819
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||||| || | | |||||||||| ||| || |||| |||
Sbjct 10820 GATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 10878
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187
| | | ||||| ||| || || |||| ||||| || ||||| || ||
Sbjct 10879 TGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAG 10930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543186848008480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |