Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq3769 95.1 1e-14
seq2686 87.8 2e-12
seq180 82.4 8e-11
>seq3769
Length=13229
Score = 95.1 bits (104), Expect = 1e-14
Identities = 107/141 (76%), Gaps = 3/141 (2%)
Strand=Plus/Minus
Query 115366 GCACGGTTTTCATGTTCACGAATTCGGCGACA-CT--AGCAACGGCTGCACGTCCGCCGG 115422
|||||| || || || |||| |||||||||| || | | |||||||||| ||| ||||
Sbjct 10112 GCACGGCTTCCACGTCCACGCCTTCGGCGACATCTTCACCGACGGCTGCACCTCCACCGG 10053
Query 115423 CGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCACGT 115482
|| ||| | |||||| || |||| || |||| ||| |||| || | |||||||||
Sbjct 10052 CGGGCACTACAACCCCTTCAACCGCGAGCACGCCGCGCCGACCGAGCGGAACCGCCACGT 9993
Query 115483 CGGTGATCTGGGCAACGTCGA 115503
||| || || |||||| ||||
Sbjct 9992 CGGCGACCTCGGCAACATCGA 9972
>seq2686
Length=8065
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | ||||| || || || |||||||| || | | |||||| ||||
Sbjct 6577 AAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 6636
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||| || | ||||| |||||||||||||| || || || || || ||
Sbjct 6637 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 6696
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || || | || || | ||||| || | || | ||
Sbjct 6697 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGT 6756
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| || | || || ||||| || |||||
Sbjct 6757 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6789
>seq180
Length=11059
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || || | ||| || || || || |||||||| || | | ||||| ||||
Sbjct 10740 AGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACCGTCC 10799
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || || | ||||| |||||||||||||||||||| || || || ||
Sbjct 10800 TCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCC 10859
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 10860 TGGATCTT 10867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499620929469680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |