Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3769 95.1 1e-14 seq2686 87.8 2e-12 seq180 82.4 8e-11 >seq3769 Length=13229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 115366 GCACGGTTTTCATGTTCACGAATTCGGCGACA-CT--AGCAACGGCTGCACGTCCGCCGG 115422 |||||| || || || |||| |||||||||| || | | |||||||||| ||| |||| Sbjct 10112 GCACGGCTTCCACGTCCACGCCTTCGGCGACATCTTCACCGACGGCTGCACCTCCACCGG 10053 Query 115423 CGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCACGT 115482 || ||| | |||||| || |||| || |||| ||| |||| || | ||||||||| Sbjct 10052 CGGGCACTACAACCCCTTCAACCGCGAGCACGCCGCGCCGACCGAGCGGAACCGCCACGT 9993 Query 115483 CGGTGATCTGGGCAACGTCGA 115503 ||| || || |||||| |||| Sbjct 9992 CGGCGACCTCGGCAACATCGA 9972 >seq2686 Length=8065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| || || || |||||||| || | | |||||| |||| Sbjct 6577 AAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 6636 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || | ||||| |||||||||||||| || || || || || || Sbjct 6637 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 6696 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || | ||||| || | || | || Sbjct 6697 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGT 6756 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || || ||||| || ||||| Sbjct 6757 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6789 >seq180 Length=11059 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | ||| || || || || |||||||| || | | ||||| |||| Sbjct 10740 AGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACCGTCC 10799 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | ||||| |||||||||||||||||||| || || || || Sbjct 10800 TCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCC 10859 Query 64352 TGTATTTT 64359 || || || Sbjct 10860 TGGATCTT 10867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499620929469680