Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 316 2e-81
>seq2414
Length=19474
Score = 316 bits (350), Expect = 2e-81
Identities = 1116/1723 (65%), Gaps = 50/1723 (3%)
Strand=Plus/Plus
Query 93717 TTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAG 93776
|||| | | ||| | |||||| ||||| ||| || ||||||||| || | |||||
Sbjct 1674 TTACAACTTCTTCGGCTTCAAGACTCTCGAGCGTTCCTACCTCCTCCGCATCGGTGGCAA 1733
Query 93777 GGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGA 93836
||| ||||||| ||||| || |||| ||||| || || |||| || |||||| || |
Sbjct 1734 GGTCGCCGAGCGCCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAA 1793
Query 93837 CATG--CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTAT---ACCATG 93891
||| ||| ||| | | | | | |||| ||| | | || |||
Sbjct 1794 CATCGACCG--TGTCATCGAGACCTATAACCTCATGTCGGA---GCGCTACTTCACCCAC 1848
Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951
|| | || ||||| |||||||| || || || | |||||||| || || |||||
Sbjct 1849 GCTTCGCCTACCCTCTTCAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTCCTT 1908
Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
| | | |||| |||||| || || || | ||||| ||||||| ||| ||
Sbjct 1909 GTCGCCATGAAGGACGACTCGATTGATGGCATCTACGACACCCTCAAGACCTGCGCTCAG 1968
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071
||||| || || || || || || || ||||| || | ||||||| ||| ||
Sbjct 1969 ATCTCCAAGACTGCCGGCGGTATTGGTCTCCACATCCACAACATCCGTGCCAAGGGCTCG 2028
Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131
||||| ||||||||| || ||||||||| |||| || |||||||| | | | |
Sbjct 2029 TACATTGCCGGTACCAACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGAT 2088
Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191
| | || || ||||| |||||||| || | | | ||| | || || ||||
Sbjct 2089 GCCACTGCTCGTTACGTCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTAC 2148
Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251
|||||||| |||||||| ||||| | ||| ||||||| || ||||||||||||||
Sbjct 2149 CTCGAGCCTTGGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAG 2208
Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308
|| ||||| | ||| | |||||||||||||| |||||| | || ||||| || |||
Sbjct 2209 GA---GGAGATGCGTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATG 2265
Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368
|| || |||||| || || ||||| || | || ||| || || ||||| ||
Sbjct 2266 AAGCGTGTCGAGGCGGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTT 2325
Query 94369 TCCGACGT-TTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCA 94426
||||||| | | | | || || | | || | ||||| | || ||||||
Sbjct 2326 GCCGACGTCCACTCGGAGGAG-TTCGAGCAGCTTTACGAGAAGTACGAGAGCG-AGGGCA 2383
Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486
||| | ||| || | ||| |||||| ||| ||| | || | ||| |
Sbjct 2384 AGGGTCGCAAGACCATCAAGGCTCAGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTG 2443
Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546
|||| ||| |||| ||| | | ||||||| | | |||| ||||||| ||||||||||
Sbjct 2444 AGACTGGTGGTCCCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGC 2503
Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606
||||||| |||||| || || || ||||| ||||| | ||||| | || || |
Sbjct 2504 ACCTCGGCACCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTG 2563
Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA----GAT 94662
||||| | || || || ||||| | ||| || || || | || || ||| ||
Sbjct 2564 ACGAGGTCGCCGTCTGCAACCTTGCCTCGATTGCTCTTCCCGCCTTTGT-CGACTTTGAG 2622
Query 94663 GCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG 94722
|| | || ||| |||| | ||| | ||| | || ||| |
Sbjct 2623 GCTCAGAC--TTACGACTTC-AAGAAGCTGCACGAGATCACCAAGGTCG---------TC 2670
Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAG-AACTTCTACCCCGTCCCGGAGGCGGAGAA 94781
| |||||| || ||| ||| || | |||| |||||||||| |||||| ||
Sbjct 2671 ACCAAGAACCTCGACCAGGTCATC-ACTCGCAACTACTACCCCGTCAAGGAGGCTCGCAA 2729
Query 94782 CTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGT 94841
||| ||| || || || ||| |||| |||| || |||||| |||| ||| | | |
Sbjct 2730 CTCCAACATGCGCCACCGCCCCGTCGGTCTCGGTGTTCAGGGTCTCGCCGACACCTTCAT 2789
Query 94842 GATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGA 94901
| | || |||||| |||||| || || | | || | || || |||||
Sbjct 2790 GGCTCTCCGCATGCCCTTCGACTCGCCTGAGGCTCGTGAGCTCAACCTCAAGATCTTCGA 2849
Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961
| ||| || ||| ||| | | ||| | | | |||| ||| |||
Sbjct 2850 GACCATCTACCACGCCGCCCTCGAGTCGTCCAGCGAGCTTGCCA---AGGAGCTCGGCAA 2906
Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021
|| |||| | || |||||| | ||||||| | |||||||||||||||||
Sbjct 2907 GTACCCCTCGTACGAGGGCTCGCCCATCTCCCAGGGCAAGCTCCAGTTCGACCTCTGGGG 2966
Query 95022 -TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACG 95080
||| || | | || | ||||||| |||| || || | | | | | ||||
Sbjct 2967 CCGTG-CTCCTACCGACCTCTGGGACTGGGCCCCTCTCCGTGCGCAGATCAGCGAGCACG 3025
Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140
||||| ||| |||| || || ||||||||||| || || || || |||||||||| |
Sbjct 3026 GTGTGCGCAACTCGCTTCTCGTTGCCCCCATGCCTACTGCTTCGACCTCGCAGATCCTCG 3085
Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200
|| ||||||| ||||| || | |||||| | | ||| | || |||||| | |
Sbjct 3086 GCTGGAACGAGTGCTTCGAGCCATACACCTCGATGCTCTACGCTCGCCGTGTGCTCTCGG 3145
Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGG 95260
| || |||| || || | ||||| || ||||||| || || | ||||
Sbjct 3146 GTGACTTCCAGGTTGTCTGCCCATGGCTCCTGCGTGACCTGATCAACCTCGGCATCTGGG 3205
Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGCCAAC---GGCTCCGTCCAGAACATCCCGC 95317
||||| | |||||| || | ||||||| || || |||||||||| ||
Sbjct 3206 ACGACAACATGAAGAAC---CTCATCATCGCCAACCGTGGTTCGATCCAGAACATTCCCA 3262
Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGA 95377
| || ||||| || |||||||| |||||||||| || |||||||| ||||| |
Sbjct 3263 ACATCCCGGACGAGATCAAGGCCATCTACAAGACGGTCTGGGAGATTTCGCAGAAGGCCG 3322
Query 95378 TACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAG 95420
| |||||| ||| |||| ||| || | |||||| ||||||
Sbjct 3323 TCATCGACCTCGCCGCCGACCGTGGCGCGTTCATCGACCAGAG 3365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494699564599120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |