Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2414 316 2e-81 >seq2414 Length=19474 Score = 316 bits (350), Expect = 2e-81 Identities = 1116/1723 (65%), Gaps = 50/1723 (3%) Strand=Plus/Plus Query 93717 TTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAG 93776 |||| | | ||| | |||||| ||||| ||| || ||||||||| || | ||||| Sbjct 1674 TTACAACTTCTTCGGCTTCAAGACTCTCGAGCGTTCCTACCTCCTCCGCATCGGTGGCAA 1733 Query 93777 GGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGA 93836 ||| ||||||| ||||| || |||| ||||| || || |||| || |||||| || | Sbjct 1734 GGTCGCCGAGCGCCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAA 1793 Query 93837 CATG--CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTAT---ACCATG 93891 ||| ||| ||| | | | | | |||| ||| | | || ||| Sbjct 1794 CATCGACCG--TGTCATCGAGACCTATAACCTCATGTCGGA---GCGCTACTTCACCCAC 1848 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || | || ||||| |||||||| || || || | |||||||| || || ||||| Sbjct 1849 GCTTCGCCTACCCTCTTCAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTCCTT 1908 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | | |||| |||||| || || || | ||||| ||||||| ||| || Sbjct 1909 GTCGCCATGAAGGACGACTCGATTGATGGCATCTACGACACCCTCAAGACCTGCGCTCAG 1968 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || || || || || || || ||||| || | ||||||| ||| || Sbjct 1969 ATCTCCAAGACTGCCGGCGGTATTGGTCTCCACATCCACAACATCCGTGCCAAGGGCTCG 2028 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||||||| || ||||||||| |||| || |||||||| | | | | Sbjct 2029 TACATTGCCGGTACCAACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGAT 2088 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || || ||||| |||||||| || | | | ||| | || || |||| Sbjct 2089 GCCACTGCTCGTTACGTCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTAC 2148 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||||| ||||| | ||| ||||||| || |||||||||||||| Sbjct 2149 CTCGAGCCTTGGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAG 2208 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | ||| | |||||||||||||| |||||| | || ||||| || ||| Sbjct 2209 GA---GGAGATGCGTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATG 2265 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || |||||| || || ||||| || | || ||| || || ||||| || Sbjct 2266 AAGCGTGTCGAGGCGGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTT 2325 Query 94369 TCCGACGT-TTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCA 94426 ||||||| | | | | || || | | || | ||||| | || |||||| Sbjct 2326 GCCGACGTCCACTCGGAGGAG-TTCGAGCAGCTTTACGAGAAGTACGAGAGCG-AGGGCA 2383 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 ||| | ||| || | ||| |||||| ||| ||| | || | ||| | Sbjct 2384 AGGGTCGCAAGACCATCAAGGCTCAGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTG 2443 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 |||| ||| |||| ||| | | ||||||| | | |||| ||||||| |||||||||| Sbjct 2444 AGACTGGTGGTCCCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGC 2503 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 ||||||| |||||| || || || ||||| ||||| | ||||| | || || | Sbjct 2504 ACCTCGGCACCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTG 2563 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA----GAT 94662 ||||| | || || || ||||| | ||| || || || | || || ||| || Sbjct 2564 ACGAGGTCGCCGTCTGCAACCTTGCCTCGATTGCTCTTCCCGCCTTTGT-CGACTTTGAG 2622 Query 94663 GCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG 94722 || | || ||| |||| | ||| | ||| | || ||| | Sbjct 2623 GCTCAGAC--TTACGACTTC-AAGAAGCTGCACGAGATCACCAAGGTCG---------TC 2670 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAG-AACTTCTACCCCGTCCCGGAGGCGGAGAA 94781 | |||||| || ||| ||| || | |||| |||||||||| |||||| || Sbjct 2671 ACCAAGAACCTCGACCAGGTCATC-ACTCGCAACTACTACCCCGTCAAGGAGGCTCGCAA 2729 Query 94782 CTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGT 94841 ||| ||| || || || ||| |||| |||| || |||||| |||| ||| | | | Sbjct 2730 CTCCAACATGCGCCACCGCCCCGTCGGTCTCGGTGTTCAGGGTCTCGCCGACACCTTCAT 2789 Query 94842 GATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGA 94901 | | || |||||| |||||| || || | | || | || || ||||| Sbjct 2790 GGCTCTCCGCATGCCCTTCGACTCGCCTGAGGCTCGTGAGCTCAACCTCAAGATCTTCGA 2849 Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961 | ||| || ||| ||| | | ||| | | | |||| ||| ||| Sbjct 2850 GACCATCTACCACGCCGCCCTCGAGTCGTCCAGCGAGCTTGCCA---AGGAGCTCGGCAA 2906 Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 || |||| | || |||||| | ||||||| | ||||||||||||||||| Sbjct 2907 GTACCCCTCGTACGAGGGCTCGCCCATCTCCCAGGGCAAGCTCCAGTTCGACCTCTGGGG 2966 Query 95022 -TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACG 95080 ||| || | | || | ||||||| |||| || || | | | | | |||| Sbjct 2967 CCGTG-CTCCTACCGACCTCTGGGACTGGGCCCCTCTCCGTGCGCAGATCAGCGAGCACG 3025 Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140 ||||| ||| |||| || || ||||||||||| || || || || |||||||||| | Sbjct 3026 GTGTGCGCAACTCGCTTCTCGTTGCCCCCATGCCTACTGCTTCGACCTCGCAGATCCTCG 3085 Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200 || ||||||| ||||| || | |||||| | | ||| | || |||||| | | Sbjct 3086 GCTGGAACGAGTGCTTCGAGCCATACACCTCGATGCTCTACGCTCGCCGTGTGCTCTCGG 3145 Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGG 95260 | || |||| || || | ||||| || ||||||| || || | |||| Sbjct 3146 GTGACTTCCAGGTTGTCTGCCCATGGCTCCTGCGTGACCTGATCAACCTCGGCATCTGGG 3205 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGCCAAC---GGCTCCGTCCAGAACATCCCGC 95317 ||||| | |||||| || | ||||||| || || |||||||||| || Sbjct 3206 ACGACAACATGAAGAAC---CTCATCATCGCCAACCGTGGTTCGATCCAGAACATTCCCA 3262 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGA 95377 | || ||||| || |||||||| |||||||||| || |||||||| ||||| | Sbjct 3263 ACATCCCGGACGAGATCAAGGCCATCTACAAGACGGTCTGGGAGATTTCGCAGAAGGCCG 3322 Query 95378 TACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAG 95420 | |||||| ||| |||| ||| || | |||||| |||||| Sbjct 3323 TCATCGACCTCGCCGCCGACCGTGGCGCGTTCATCGACCAGAG 3365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494699564599120