Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 116 4e-21
seq2686 93.3 4e-14
seq1908 86.0 6e-12
seq3769 84.2 2e-11
seq180 82.4 8e-11
>seq2414
Length=19474
Score = 116 bits (128), Expect = 4e-21
Identities = 333/503 (66%), Gaps = 17/503 (3%)
Strand=Plus/Minus
Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655
||||| || || || || |||||||| ||| || |||| || ||||| | ||||||
Sbjct 2597 GCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGA-GTACTCAATGATCTC 2539
Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715
| |||||||||| | || ||| ||| | | ||||| || ||| |||
Sbjct 2538 AGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGC 2479
Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AA 153772
||||| ||| |||||||| | || || || ||||| || | |||| |||| ||
Sbjct 2478 GGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAA 2419
Query 153773 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832
|| | || | ||| || | || ||| ||||||||||||||| |||
Sbjct 2418 CCAAAGC---TTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTTCTC 2362
Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACA 153892
||| || |||| ||||| || || | |||||| |||||||| |||| || ||
Sbjct 2361 GTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCA 2302
Query 153893 CATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952
||| || | ||| |||| || | ||| || |||||| || || || | ||||||
Sbjct 2301 CATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAG 2242
Query 153953 CGCGTACATGAGGTCGCGCGCCTTGCAA-TCCTCCGCGCCCATGTTGCGTTTCAGA--TT 154009
||||| | |||||| || || ||| |||||| ||| ||| || | || |
Sbjct 2241 GGCGTAGAAGAGGTCACGGGCAC-GCATCTCCTCCTTGCCGTGGTTC--TTGCGGAGGTC 2185
Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069
||| | | ||| |||||||||||| || || | ||||| ||| | |||||| ||
Sbjct 2184 GAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCG 2125
Query 154070 C---TTTCCGCCCTGATCGACGT 154089
| || |||||||| |||||||
Sbjct 2124 CTTGTTGCCGCCCTGGTCGACGT 2102
>seq2686
Length=8065
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | || || ||||||||| || || || |
Sbjct 6596 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 6655
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||| || || || || || ||||| ||| || || |
Sbjct 6656 AAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 6715
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| |||||||||||||| || | || || || || || || ||
Sbjct 6716 TTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTG 6775
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 6776 ACGAAGATCTGCAT 6789
>seq1908
Length=40588
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 57300 GGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTC 57359
|| || ||||||||| | ||| |||| ||| ||| | | || |||| || ||||| |
Sbjct 7917 GGTCTTGACGTTGCCGAGGTCACCGATGTGGCGCTCAGAGTCGGTGGGGGCACCGTGCTT 7858
Query 57360 GCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAA 57419
||||| |||||| ||||| |||| ||||| ||||||||||| | ||| |||||
Sbjct 7857 CTTGCCGTGGGGGTTGAAGTGGGCGCCGGCCGAGGTGCAGCCGTTCGAGAGGTCACCGAA 7798
Query 57420 CTCGTGAACGTGAAATCCGTGCAGG 57444
|| ||| | ||| || ||| || ||
Sbjct 7797 CTGGTGGATGTGGAAGCCGCGCTGG 7773
>seq3769
Length=13229
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/145 (73%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 57300 GGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTC 57359
|||||||| |||||| | |||||||||||| || | || | || ||| |||| ||
Sbjct 9968 GGCCTCGATGTTGCCGAGGTCGCCGACGTGGCGGTTCCGCTCGGTCGGCGCGGCGTGCTC 10027
Query 57360 GCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGT---TGCTGGTGTCGCC 57416
|| | | |||||| ||||| |||| | || |||||||||| || | |||||||
Sbjct 10028 GCGGTTGAAGGGGTTGTAGTGCCCGCCGGTGGAGGTGCAGCCGTCGGTGAAGATGTCGCC 10087
Query 57417 GAACTCGTGAACGTGAAATCCGTGC 57441
||| |||| ||||| || ||||||
Sbjct 10088 GAAGGCGTGGACGTGGAAGCCGTGC 10112
>seq180
Length=11059
Score = 82.4 bits (90), Expect = 8e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | || || ||||||||| || || || |
Sbjct 10758 GACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCG 10817
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||| ||||| ||||| || ||||| ||| || || |
Sbjct 10818 AAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACG 10877
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAG 138593
| || | |||||| | |||||| ||||||| || | ||| || || || ||
Sbjct 10878 TTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAG 10930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496238691063840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |