Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2414 116 4e-21 seq2686 93.3 4e-14 seq1908 86.0 6e-12 seq3769 84.2 2e-11 seq180 82.4 8e-11 >seq2414 Length=19474 Score = 116 bits (128), Expect = 4e-21 Identities = 333/503 (66%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655 ||||| || || || || |||||||| ||| || |||| || ||||| | |||||| Sbjct 2597 GCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGA-GTACTCAATGATCTC 2539 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | |||||||||| | || ||| ||| | | ||||| || ||| ||| Sbjct 2538 AGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGC 2479 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AA 153772 ||||| ||| |||||||| | || || || ||||| || | |||| |||| || Sbjct 2478 GGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAA 2419 Query 153773 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832 || | || | ||| || | || ||| ||||||||||||||| ||| Sbjct 2418 CCAAAGC---TTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTTCTC 2362 Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACA 153892 ||| || |||| ||||| || || | |||||| |||||||| |||| || || Sbjct 2361 GTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCA 2302 Query 153893 CATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 ||| || | ||| |||| || | ||| || |||||| || || || | |||||| Sbjct 2301 CATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAG 2242 Query 153953 CGCGTACATGAGGTCGCGCGCCTTGCAA-TCCTCCGCGCCCATGTTGCGTTTCAGA--TT 154009 ||||| | |||||| || || ||| |||||| ||| ||| || | || | Sbjct 2241 GGCGTAGAAGAGGTCACGGGCAC-GCATCTCCTCCTTGCCGTGGTTC--TTGCGGAGGTC 2185 Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 ||| | | ||| |||||||||||| || || | ||||| ||| | |||||| || Sbjct 2184 GAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCG 2125 Query 154070 C---TTTCCGCCCTGATCGACGT 154089 | || |||||||| ||||||| Sbjct 2124 CTTGTTGCCGCCCTGGTCGACGT 2102 >seq2686 Length=8065 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || || || | Sbjct 6596 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 6655 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || ||||| ||| || || | Sbjct 6656 AAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 6715 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| |||||||||||||| || | || || || || || || || Sbjct 6716 TTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTG 6775 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 6776 ACGAAGATCTGCAT 6789 >seq1908 Length=40588 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 57300 GGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTC 57359 || || ||||||||| | ||| |||| ||| ||| | | || |||| || ||||| | Sbjct 7917 GGTCTTGACGTTGCCGAGGTCACCGATGTGGCGCTCAGAGTCGGTGGGGGCACCGTGCTT 7858 Query 57360 GCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAA 57419 ||||| |||||| ||||| |||| ||||| ||||||||||| | ||| ||||| Sbjct 7857 CTTGCCGTGGGGGTTGAAGTGGGCGCCGGCCGAGGTGCAGCCGTTCGAGAGGTCACCGAA 7798 Query 57420 CTCGTGAACGTGAAATCCGTGCAGG 57444 || ||| | ||| || ||| || || Sbjct 7797 CTGGTGGATGTGGAAGCCGCGCTGG 7773 >seq3769 Length=13229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 57300 GGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTC 57359 |||||||| |||||| | |||||||||||| || | || | || ||| |||| || Sbjct 9968 GGCCTCGATGTTGCCGAGGTCGCCGACGTGGCGGTTCCGCTCGGTCGGCGCGGCGTGCTC 10027 Query 57360 GCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGT---TGCTGGTGTCGCC 57416 || | | |||||| ||||| |||| | || |||||||||| || | ||||||| Sbjct 10028 GCGGTTGAAGGGGTTGTAGTGCCCGCCGGTGGAGGTGCAGCCGTCGGTGAAGATGTCGCC 10087 Query 57417 GAACTCGTGAACGTGAAATCCGTGC 57441 ||| |||| ||||| || |||||| Sbjct 10088 GAAGGCGTGGACGTGGAAGCCGTGC 10112 >seq180 Length=11059 Score = 82.4 bits (90), Expect = 8e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || || || | Sbjct 10758 GACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCG 10817 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| ||||| || ||||| ||| || || | Sbjct 10818 AAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACG 10877 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAG 138593 | || | |||||| | |||||| ||||||| || | ||| || || || || Sbjct 10878 TTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAG 10930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496238691063840