Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq180 123 2e-23 seq2686 102 8e-17 seq1321 98.7 9e-16 seq238 96.9 3e-15 seq3769 86.0 6e-12 >seq180 Length=11059 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| || | ||||||||| || || || ||||| || Sbjct 10725 CCACCACGAAGACGGAGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAA 10784 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| ||||| ||| |||| | |||||||| |||||||| Sbjct 10785 AGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGA 10844 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| ||||| |||| |||| |||||||| |||||| Sbjct 10845 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATGGTGTCCGACGACTCGAC 10903 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| || | ||| |||||||| || Sbjct 10904 CTCGAGAGTGATCGTCTTGCCGGTGAG 10930 >seq2686 Length=8065 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| || ||| Sbjct 6593 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 6652 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 6653 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 6712 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||| || |||| ||| | || ||||| || || || Sbjct 6713 ACGTTG-TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 6771 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 6772 CTTGACGAAGATCTGCAT 6789 >seq1321 Length=24731 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | || | |||||||| ||||| | |||||||| | | | | | | | | Sbjct 18982 CCCTGCATCCGGAAGAAGGCCGACTGGGCGCTCAAGTACATC-ACACCAGATATGCCCTT 19040 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | | || ||| ||||||| || || || |||||| |||||||||||||| || Sbjct 19041 CCGCACG--CGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTC 19098 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 ||||| || || | | || | || | |||| ||||||||| || ||||||| Sbjct 19099 GCGGCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAG 19158 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC 47294 || |||||| | ||||| ||| |||||||| |||| ||||| ||| Sbjct 19159 CTCATCTCGCGCGACGAGGGCATGCACACCGACTTCGCCTGCCTC 19203 >seq238 Length=11627 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| |||||||| || ||||||||| Sbjct 11557 TCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTG 11498 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||| ||||| |||| |||| |||||||| |||||| || | ||| | Sbjct 11497 TCCTGGATTTTCGACTTGACGTTG-TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGAT 11439 Query 127078 CGTTTTGCCGGTCAG 127092 || |||||||| || Sbjct 11438 GGTCTTGCCGGTGAG 11424 >seq3769 Length=13229 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/143 (73%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 50654 GCTTCTATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTG 50713 || || |||||||| || |||||||||||||||| || | || ||| |||| | | Sbjct 9969 GCCTCGATGTTGCCGAGGTCGCCGACGTGGCGGTTCCGCTCGGTCGGCGCGGCGTGCTCG 10028 Query 50714 CGGCCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGT---TGCTCGTGTCGCCG 50770 ||| || || || ||||| |||||| || |||||||||| || |||||||| Sbjct 10029 CGGTTGAAGGGGTTGTAGTGCCCGCCGGTGGAGGTGCAGCCGTCGGTGAAGATGTCGCCG 10088 Query 50771 AATTCGTGCACGTGGAACCCGTG 50793 || |||| |||||||| ||||| Sbjct 10089 AAGGCGTGGACGTGGAAGCCGTG 10111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478082949280