Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2414 215 6e-51 seq1321 107 2e-18 seq400 107 2e-18 seq252 93.3 5e-14 seq2988 91.5 2e-13 >seq2414 Length=19474 Score = 215 bits (238), Expect = 6e-51 Identities = 678/1040 (65%), Gaps = 29/1040 (3%) Strand=Plus/Minus Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || |||||||| || |||||||| || | ||||| || | ||| || || || ||||| Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721 Query 116308 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367 || ||||| || | || | | ||| ||| | || || |||||||| ||||| Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661 Query 116368 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 116427 ||||| || || ||||| | | | || || | ||| ||| | |||| | ||| Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601 Query 116428 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 116487 || || || || || || || || || | | ||| || | |||||| || || Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATC 2541 Query 116488 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 116547 || || || | || || ||| |||||||| | || || || || ||||| | ||| Sbjct 2540 TCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTG 2481 Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 116607 || |||||||||||||| | || || ||||| || || | || ||| ||||| Sbjct 2480 GCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCG 2421 Query 116608 TTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTA 116660 ||| | | || | | || | ||| ||| || |||| |||| |||||| Sbjct 2420 AACCAAAGCTTCTGAGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCGCTCTCGTA 2368 Query 116661 CTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCTTA 116718 ||| ||| || ||| ||||| || | | | | || | || || || || Sbjct 2367 CTTCTCGTAAAGCTGCTCGAACTCCTC--CGAGTGGACGTCGGCAAGGCCGGGGCACTCG 2310 Query 116719 TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778 | || || | ||| | ||| | || || |||| || ||||||||||||||||| ||| Sbjct 2309 GCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGG 2250 Query 116779 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGAC 116836 |||||||| || ||||||| || || || || ||| || | || || || | Sbjct 2249 ATCCAGAGGGCGTAGAAGAGGTCACGG--GCACGCATCTCCTCCTTGCCGTGGTTCTTGC 2192 Query 116837 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 116896 | | || | ||||| | || || |||||||| || || ||||| | || | | | Sbjct 2191 GGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCAC 2132 Query 116897 CCTTGCGACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCA 116953 | ||| || |||||| || || | || || || | | | || |||| Sbjct 2131 CGGGGCGCTTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCA 2072 Query 116954 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCT 117011 | |||| |||||| | || | || || || || ||| ||||| | | |||| | Sbjct 2071 TGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCACG 2014 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071 || | ||||||||| | ||||||||| || || ||| ||||| || ||||| | | Sbjct 2013 GATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTT 1954 Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 117131 ||| || ||||||| ||||| |||||||| |||| | |||| |||||||| || Sbjct 1953 GAGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGA 1894 Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 117191 ||| || | || |||||||||||||||||||| || | |||||| |||| | Sbjct 1893 CATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCG 1834 Query 117192 TTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGAT 117251 | ||||| | |||||||| | |||| | |||| || ||||| ||||||| Sbjct 1833 CTCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGAC 1774 Query 117252 TGAGACCCGCATAAACATGT 117271 || || ||||||| ||||| Sbjct 1773 GGACACACGCATAAGCATGT 1754 >seq1321 Length=24731 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || |||||||| || || |||||| || || |||| ||||| |||||| Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || || |||||||| ||||||||||| ||||| |||||||| || Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059 Query 127658 GCAAATAGACGC 127669 || | |||||| Sbjct 19058 GCGATCAGACGC 19047 >seq400 Length=29784 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA-CACGGTTGATTTTCACGGGCAA 12930 |||||||| |||||| || ||||| ||||| ||||| || || | | ||| | | Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTCCTAGCCTG 15554 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | |||||| ||| ||||| | | || ||||||||| ||||||||||| || || | || Sbjct 15555 CG-CAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613 Query 12991 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050 |||| || ||||||||| |||| ||||| || |||| ||| ||||||| Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673 Query 13051 TCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 |||| || || || || |||| || | ||| || || || ||| |||||||| Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729 >seq252 Length=28045 Score = 93.3 bits (102), Expect = 5e-14 Identities = 171/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 || || ||||| ||| | |||||| || || ||||| ||||| || | ||||| Sbjct 5950 GCGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 6009 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||| | | | | | ||||| || ||||| ||| | |||| Sbjct 6010 TTGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCA 6069 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103 ||||| |||||||||| || || | ||| || || |||| ||| || ||||| ||||| Sbjct 6070 CCGTGGTGGTAGGCCGTGTTCTCGGACACGTAA-CCACCAAGCTGTGCGACCTTAATCTC 6128 Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163 | ||||||||| | |||||| | ||||| ||||| | ||| |||||| ||||| Sbjct 6129 CTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTAGGCC 6188 Query 176164 GTCGGCCA 176171 |||||||| Sbjct 6189 GTCGGCCA 6196 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||||||||| || ||||||||| | | |||| ||| |||||||| ||||| || Sbjct 6664 CTTGAGGAGGGAGGGGTAGAAGTAGTCAAGGAAGTTGATGATAAGACCCTTGATGTGCGA 6723 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAG 176703 ||| |||| ||| ||| ||||| ||||||||| | || || || || Sbjct 6724 ACCGTCGTGATCTTGATCGGTCATGATCATGAGCTGGCCGTAACGCAG 6771 >seq2988 Length=9850 Score = 91.5 bits (100), Expect = 2e-13 Identities = 301/462 (65%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| || || ||||| || | ||| || | ||||| || |||| ||||||| ||| Sbjct 1897 AACCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGT 1956 Query 175806 AGTCTGGTTCAATCGCAC-GCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTC 175864 | || || || || || | | || || ||| | | ||| | || | ||||| || Sbjct 1957 ACTCGGGCTCGAT-GCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCG 2015 Query 175865 GGATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGA 175923 |||| || | || | |||| | | ||| ||||| ||||| | || | Sbjct 2016 GGATGGAACACAGCGCGGGTCATCGCGGACGTGTTG-GTGAAAATGTAACGCGCGCTGGC 2074 Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983 || || || |||||| | |||||| || || ||||| ||||| || | ||||| Sbjct 2075 AGCGTCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGAT 2134 Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT-- 176041 ||||| ||||| | | | | || | |||||| ||| | || ||||| Sbjct 2135 GTTGTTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGC----AGTCAGACTCT 2190 Query 176042 --TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCA 176099 || ||||| ||||| |||| || || | ||| || | | | |||||| ||||| | Sbjct 2191 GTTCGCCGTGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGA 2250 Query 176100 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGA 176159 |||| | |||||| || | |||||| | ||||||||||| | ||| ||||||| Sbjct 2251 TCTCCTTCTTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGA 2310 Query 176160 GGCCGTCGGCCATGTGTGCGATGGAACGCTTCAAGTCTGCCA 176201 |||||||||| | || ||| |||||| | ||| |||| Sbjct 2311 GGCCGTCGGCAACCGATGGGATCGAACGCATGTTGTCGGCCA 2352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613477889693520