Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 215 6e-51
seq1321 107 2e-18
seq400 107 2e-18
seq252 93.3 5e-14
seq2988 91.5 2e-13
>seq2414
Length=19474
Score = 215 bits (238), Expect = 6e-51
Identities = 678/1040 (65%), Gaps = 29/1040 (3%)
Strand=Plus/Minus
Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307
|| |||||||| || |||||||| || | ||||| || | ||| || || || |||||
Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721
Query 116308 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367
|| ||||| || | || | | ||| ||| | || || |||||||| |||||
Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661
Query 116368 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 116427
||||| || || ||||| | | | || || | ||| ||| | |||| | |||
Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601
Query 116428 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 116487
|| || || || || || || || || | | ||| || | |||||| || ||
Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATC 2541
Query 116488 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 116547
|| || || | || || ||| |||||||| | || || || || ||||| | |||
Sbjct 2540 TCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTG 2481
Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 116607
|| |||||||||||||| | || || ||||| || || | || ||| |||||
Sbjct 2480 GCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCG 2421
Query 116608 TTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTA 116660
||| | | || | | || | ||| ||| || |||| |||| ||||||
Sbjct 2420 AACCAAAGCTTCTGAGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCGCTCTCGTA 2368
Query 116661 CTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCTTA 116718
||| ||| || ||| ||||| || | | | | || | || || || ||
Sbjct 2367 CTTCTCGTAAAGCTGCTCGAACTCCTC--CGAGTGGACGTCGGCAAGGCCGGGGCACTCG 2310
Query 116719 TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778
| || || | ||| | ||| | || || |||| || ||||||||||||||||| |||
Sbjct 2309 GCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGG 2250
Query 116779 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGAC 116836
|||||||| || ||||||| || || || || ||| || | || || || |
Sbjct 2249 ATCCAGAGGGCGTAGAAGAGGTCACGG--GCACGCATCTCCTCCTTGCCGTGGTTCTTGC 2192
Query 116837 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 116896
| | || | ||||| | || || |||||||| || || ||||| | || | | |
Sbjct 2191 GGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCAC 2132
Query 116897 CCTTGCGACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCA 116953
| ||| || |||||| || || | || || || | | | || ||||
Sbjct 2131 CGGGGCGCTTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCA 2072
Query 116954 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCT 117011
| |||| |||||| | || | || || || || ||| ||||| | | |||| |
Sbjct 2071 TGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCACG 2014
Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071
|| | ||||||||| | ||||||||| || || ||| ||||| || ||||| | |
Sbjct 2013 GATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTT 1954
Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 117131
||| || ||||||| ||||| |||||||| |||| | |||| |||||||| ||
Sbjct 1953 GAGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGA 1894
Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 117191
||| || | || |||||||||||||||||||| || | |||||| |||| |
Sbjct 1893 CATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCG 1834
Query 117192 TTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGAT 117251
| ||||| | |||||||| | |||| | |||| || ||||| |||||||
Sbjct 1833 CTCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGAC 1774
Query 117252 TGAGACCCGCATAAACATGT 117271
|| || ||||||| |||||
Sbjct 1773 GGACACACGCATAAGCATGT 1754
>seq1321
Length=24731
Score = 107 bits (118), Expect = 2e-18
Identities = 103/132 (78%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|||||||| || |||||||| || || |||||| || || |||| ||||| ||||||
Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | |||||| || || |||||||| ||||||||||| ||||| |||||||| ||
Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059
Query 127658 GCAAATAGACGC 127669
|| | ||||||
Sbjct 19058 GCGATCAGACGC 19047
>seq400
Length=29784
Score = 107 bits (118), Expect = 2e-18
Identities = 167/236 (71%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA-CACGGTTGATTTTCACGGGCAA 12930
|||||||| |||||| || ||||| ||||| ||||| || || | | ||| | |
Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTCCTAGCCTG 15554
Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990
| |||||| ||| ||||| | | || ||||||||| ||||||||||| || || | ||
Sbjct 15555 CG-CAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613
Query 12991 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050
|||| || ||||||||| |||| ||||| || |||| ||| |||||||
Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673
Query 13051 TCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106
|||| || || || || |||| || | ||| || || || ||| ||||||||
Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729
>seq252
Length=28045
Score = 93.3 bits (102), Expect = 5e-14
Identities = 171/248 (69%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984
|| || ||||| ||| | |||||| || || ||||| ||||| || | |||||
Sbjct 5950 GCGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 6009
Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044
||||| ||| | | | | | ||||| || ||||| ||| | ||||
Sbjct 6010 TTGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCA 6069
Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103
||||| |||||||||| || || | ||| || || |||| ||| || ||||| |||||
Sbjct 6070 CCGTGGTGGTAGGCCGTGTTCTCGGACACGTAA-CCACCAAGCTGTGCGACCTTAATCTC 6128
Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163
| ||||||||| | |||||| | ||||| ||||| | ||| |||||| |||||
Sbjct 6129 CTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTAGGCC 6188
Query 176164 GTCGGCCA 176171
||||||||
Sbjct 6189 GTCGGCCA 6196
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655
|||||||||||| || ||||||||| | | |||| ||| |||||||| ||||| ||
Sbjct 6664 CTTGAGGAGGGAGGGGTAGAAGTAGTCAAGGAAGTTGATGATAAGACCCTTGATGTGCGA 6723
Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAG 176703
||| |||| ||| ||| ||||| ||||||||| | || || || ||
Sbjct 6724 ACCGTCGTGATCTTGATCGGTCATGATCATGAGCTGGCCGTAACGCAG 6771
>seq2988
Length=9850
Score = 91.5 bits (100), Expect = 2e-13
Identities = 301/462 (65%), Gaps = 12/462 (3%)
Strand=Plus/Plus
Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805
|||| || || ||||| || | ||| || | ||||| || |||| ||||||| |||
Sbjct 1897 AACCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGT 1956
Query 175806 AGTCTGGTTCAATCGCAC-GCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTC 175864
| || || || || || | | || || ||| | | ||| | || | ||||| ||
Sbjct 1957 ACTCGGGCTCGAT-GCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCG 2015
Query 175865 GGATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGA 175923
|||| || | || | |||| | | ||| ||||| ||||| | || |
Sbjct 2016 GGATGGAACACAGCGCGGGTCATCGCGGACGTGTTG-GTGAAAATGTAACGCGCGCTGGC 2074
Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983
|| || || |||||| | |||||| || || ||||| ||||| || | |||||
Sbjct 2075 AGCGTCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGAT 2134
Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT-- 176041
||||| ||||| | | | | || | |||||| ||| | || |||||
Sbjct 2135 GTTGTTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGC----AGTCAGACTCT 2190
Query 176042 --TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCA 176099
|| ||||| ||||| |||| || || | ||| || | | | |||||| ||||| |
Sbjct 2191 GTTCGCCGTGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGA 2250
Query 176100 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGA 176159
|||| | |||||| || | |||||| | ||||||||||| | ||| |||||||
Sbjct 2251 TCTCCTTCTTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGA 2310
Query 176160 GGCCGTCGGCCATGTGTGCGATGGAACGCTTCAAGTCTGCCA 176201
|||||||||| | || ||| |||||| | ||| ||||
Sbjct 2311 GGCCGTCGGCAACCGATGGGATCGAACGCATGTTGTCGGCCA 2352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613477889693520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |