Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 127 3e-24
>seq2414
Length=19474
Score = 127 bits (140), Expect = 3e-24
Identities = 297/439 (68%), Gaps = 12/439 (3%)
Strand=Plus/Minus
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT-GCTCACGTT 203955
|| ||||| ||||| || ||| ||||| | ||||||||| | || | | |||
Sbjct 3455 CCAGTCTTGAGGCCACGCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTGCGAGAACGAG 3396
Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014
||| ||| | ||| ||||| || |||||||| ||||||||||| | |||| || || |
Sbjct 3395 GGGTTCGAA-AGGTGGATGTTGAGCGACTGGCTCTGGTCGATGAACG-CGCCACGGTCGG 3338
Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074
|||| | | ||| | || |||||||||||||||||| ||||||||| | | | | ||
Sbjct 3337 CGGCGAGGTCGATGACGGCCTTCTGCGAAATCTCCCAGACCGTCTTGTAGATGGCCTTGA 3278
Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCC---GTTGTCGGCCATCAGTCTC 204130
| | | || | | | | || || |||||| || |||| || || || ||
Sbjct 3277 TCTCGTCCGGGATGT-TGGGAATGTTCTGGATCGAACCACGGTTGGCGATGATGAGGTTC 3219
Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190
|| | | || | |||| ||||| | ||||||| || |||| || ||| |
Sbjct 3218 TTCATGTTGTCGT---CCCAGATGCCGAGGTTGATCAGGTCACGCAGGAGCCATGGGCAG 3162
Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250
| | ||| ||||| || || ||||| | || | | | || | |||| |||| |||
Sbjct 3161 ACAACCTGGAAGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGCTCG 3102
Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310
|| |||||| ||||| ||||| | ||| || || |||||||| || | |||
Sbjct 3101 AAGCACTCGTTCCAGCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGA 3042
Query 204311 AGGGAGTTGCGCACACCGT 204329
|| ||||||||||||||||
Sbjct 3041 AGCGAGTTGCGCACACCGT 3023
Score = 107 bits (118), Expect = 3e-18
Identities = 286/432 (66%), Gaps = 4/432 (1%)
Strand=Plus/Minus
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|| ||| || |||||| |||||| ||| |||| || || |||||||| | || | ||
Sbjct 2268 CTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTC 2209
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283
| || ||||||| | ||| || ||| || | | |||||||||||| ||||| |
Sbjct 2208 CTTGCCGTGGTTCTTGCGGAGGTCGAGG-AAGTCGAAGACGTCGGCGTGCCAAGGCTCGA 2150
Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343
| | ||| | || || || | |||||| || |||||||| || |||| | |
Sbjct 2149 GGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGG 2090
Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403
| | | | | || ||||| || || | |||||||| | ||||| || | | |||
Sbjct 2089 CATCGTACGCACGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGT 2030
Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463
|||||| | || | | |||| |||| ||||| ||||| | | ||||| ||
Sbjct 2029 ACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGA 1970
Query 205464 TCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522
|||| ||||| ||||| || ||| ||||||||| | || || |||||| || |
Sbjct 1969 TCTGAGCGCAGGTCTTG-AGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCG 1911
Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582
|| || |||| || | || || || || || |||| |||||| || ||
Sbjct 1910 ACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAA 1851
Query 205583 GCGTGGCTGAAG 205594
|||||| |||||
Sbjct 1850 GCGTGGGTGAAG 1839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795117211460320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |