Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2414 127 3e-24 >seq2414 Length=19474 Score = 127 bits (140), Expect = 3e-24 Identities = 297/439 (68%), Gaps = 12/439 (3%) Strand=Plus/Minus Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT-GCTCACGTT 203955 || ||||| ||||| || ||| ||||| | ||||||||| | || | | ||| Sbjct 3455 CCAGTCTTGAGGCCACGCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTGCGAGAACGAG 3396 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 ||| ||| | ||| ||||| || |||||||| ||||||||||| | |||| || || | Sbjct 3395 GGGTTCGAA-AGGTGGATGTTGAGCGACTGGCTCTGGTCGATGAACG-CGCCACGGTCGG 3338 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 |||| | | ||| | || |||||||||||||||||| ||||||||| | | | | || Sbjct 3337 CGGCGAGGTCGATGACGGCCTTCTGCGAAATCTCCCAGACCGTCTTGTAGATGGCCTTGA 3278 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCC---GTTGTCGGCCATCAGTCTC 204130 | | | || | | | | || || |||||| || |||| || || || || Sbjct 3277 TCTCGTCCGGGATGT-TGGGAATGTTCTGGATCGAACCACGGTTGGCGATGATGAGGTTC 3219 Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || | | || | |||| ||||| | ||||||| || |||| || ||| | Sbjct 3218 TTCATGTTGTCGT---CCCAGATGCCGAGGTTGATCAGGTCACGCAGGAGCCATGGGCAG 3162 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | | ||| ||||| || || ||||| | || | | | || | |||| |||| ||| Sbjct 3161 ACAACCTGGAAGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGCTCG 3102 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || |||||| ||||| ||||| | ||| || || |||||||| || | ||| Sbjct 3101 AAGCACTCGTTCCAGCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGA 3042 Query 204311 AGGGAGTTGCGCACACCGT 204329 || |||||||||||||||| Sbjct 3041 AGCGAGTTGCGCACACCGT 3023 Score = 107 bits (118), Expect = 3e-18 Identities = 286/432 (66%), Gaps = 4/432 (1%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || |||||| |||||| ||| |||| || || |||||||| | || | || Sbjct 2268 CTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTC 2209 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| | ||| || ||| || | | |||||||||||| ||||| | Sbjct 2208 CTTGCCGTGGTTCTTGCGGAGGTCGAGG-AAGTCGAAGACGTCGGCGTGCCAAGGCTCGA 2150 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | || || || | |||||| || |||||||| || |||| | | Sbjct 2149 GGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGG 2090 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 | | | | | || ||||| || || | |||||||| | ||||| || | | ||| Sbjct 2089 CATCGTACGCACGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGT 2030 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 |||||| | || | | |||| |||| ||||| ||||| | | ||||| || Sbjct 2029 ACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGA 1970 Query 205464 TCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 |||| ||||| ||||| || ||| ||||||||| | || || |||||| || | Sbjct 1969 TCTGAGCGCAGGTCTTG-AGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCG 1911 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 || || |||| || | || || || || || |||| |||||| || || Sbjct 1910 ACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAA 1851 Query 205583 GCGTGGCTGAAG 205594 |||||| ||||| Sbjct 1850 GCGTGGGTGAAG 1839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795117211460320