Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 143 3e-29
seq180 113 5e-20
seq238 98.7 1e-15
>seq2686
Length=8065
Score = 143 bits (158), Expect = 3e-29
Identities = 149/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || ||||| |||| |||||||||||||| |||||
Sbjct 6598 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 6657
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||||| || | || |||||||||| |||||| ||||| |||
Sbjct 6658 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 6716
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| ||| ||||| || | ||||| || |||||||| || || || |
Sbjct 6717 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 6776
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 6777 CGAAGATCTGCAT 6789
>seq180
Length=11059
Score = 113 bits (124), Expect = 5e-20
Identities = 140/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| |||||||| || || ||||| |||| |||
Sbjct 10743 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACCGTCCTCG 10802
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| || | ||||||||||||| || | | |||||||||| |
Sbjct 10803 AGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGG 10862
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| ||| | | | ||||| ||| || || || | ||||| || ||
Sbjct 10863 ATCTTCGACTTGA-CGTTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTT 10921
Query 46564 GCCCGTCAG 46572
||| || ||
Sbjct 10922 GCCGGTGAG 10930
>seq238
Length=11627
Score = 98.7 bits (108), Expect = 1e-15
Identities = 118/158 (75%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475
||||||| || |||||||| |||| |||||||||||||| ||||| || | |||||||
Sbjct 11580 TGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCT 11521
Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534
|||||| || | | |||||||||| ||| ||| ||||| ||| | | | |||||
Sbjct 11520 GGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTCGACTTGA-CGTTGTCGATGGTGTCC 11462
Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572
|| || || || | |||||||| ||||| || ||
Sbjct 11461 GAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAG 11424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565211395735440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |