Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 136 4e-27
seq180 113 5e-20
seq3769 105 7e-18
seq3132 105 7e-18
seq3777 95.1 1e-14
>seq2686
Length=8065
Score = 136 bits (150), Expect = 4e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| || |||||| |||| || ||| | ||
Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| || ||| |||||||
Sbjct 6729 GACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 6671
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| ||||| ||||| || |||| |||||||| ||||||||
Sbjct 6670 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 6611
Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446
|||||| ||||| |||| || ||
Sbjct 6610 CATCCAGAAGGAGTCGACCCTCCA 6587
>seq180
Length=11059
Score = 113 bits (124), Expect = 5e-20
Identities = 152/209 (73%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323
||||| ||||| || ||||| |||| |||||| | | |||| | | | |||| | ||
Sbjct 10930 CTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAA 10872
Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| |||| ||||| ||||| ||||| ||||||| ||||| ||||| | ||||||
Sbjct 10871 GTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGG 10812
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
|| ||||| || |||| ||||| || |||||||||||||| ||||| | |||||
Sbjct 10811 AAAGCAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTACGCT 10752
Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|| |||| || ||| | | || ||||
Sbjct 10751 CCACCTGGTCCTCCGTCTTCGTGGTGGCC 10723
>seq3769
Length=13229
Score = 105 bits (116), Expect = 7e-18
Identities = 204/289 (71%), Gaps = 18/289 (6%)
Strand=Plus/Plus
Query 107540 GAGGCCCAGATCGTCCCTGTCCGT-GTGCACGACCAGACTCCGTCCGATGATGCTGTGCG 107598
|||||| || |||||| | |||| ||||||||| | || || || | ||| || |
Sbjct 9851 GAGGCCGAGGTCGTCCTCG-CCGTCGTGCACGACGACACCGCGGCCCAGGATCGTGCGGC 9909
Query 107599 GGCCGTACAAAGTCACGACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGGCC-C 107657
|||| | | || | ||||| ||| || ||| | |||| ||| || || || |
Sbjct 9910 GGCCACAGAGGGTGATGACGCTGTCGGTGAAGTCGAT---GGTG-GCG-GTGCCGTCCTC 9964
Query 107658 GCCGACTT-GAGGTTGCCCAGGTCGCCGACGTGCCTGAT---CTCGGCGTCGGGCGCGCC 107713
|||| | | || |||||| |||||||||||||| | | | |||| ||| |||||| |
Sbjct 9965 GCCGGCCTCGATGTTGCCGAGGTCGCCGACGTGGCGGTTCCGCTCG--GTC-GGCGCGGC 10021
Query 107714 GTGGTCGCGCTTCGTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGT---TGCTCGC 107770
||| ||||| || |||||| | ||| |||||| || |||||||||| ||
Sbjct 10022 GTGCTCGCGGTTGAAGGGGTTGTAGTGCCCGCCGGTGGAGGTGCAGCCGTCGGTGAAGAT 10081
Query 107771 GTCGCCGAACTCGTGCACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCCG 107819
||||||||| |||| ||||||||||||||| |||| | | ||||||
Sbjct 10082 GTCGCCGAAGGCGTGGACGTGGAAGCCGTGCTTGCCGGGGGTGAGGCCG 10130
>seq3132
Length=21318
Score = 105 bits (116), Expect = 7e-18
Identities = 185/263 (70%), Gaps = 11/263 (4%)
Strand=Plus/Minus
Query 107543 GCCCAGATCGTCCCTGTCCGTGTGCACGACCAGACTCCGT--CCGATGATGCTGTGCGGG 107600
|||||| ||||| |||| | ||||| || ||||||| || |||| | ||||| |
Sbjct 14884 GCCCAGGTCGTCGTTGTCGGCATGCACCAC--GACTCCGCGCCCCATGACGTTGTGCTCG 14827
Query 107601 CCGTACAAAGTCACGACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGGCCCG-C 107659
|| ||| ||||| || |||| | | | | || || || ||| || || |
Sbjct 14826 CCACACAGGCGCACGAGGCAGTCCTTGATGTCGATCTTGGCGACACCGT----GCTCGTC 14771
Query 107660 CGACTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTC 107719
|| ||||| ||| || |||||||||| ||||| | ||| | || ||||||||||||||
Sbjct 14770 CGCCTTGATGTTCCCGAGGTCGCCGATGTGCCGGTTCTTGTCGGACGGCGCGCCGTGGTC 14711
Query 107720 GCGCTTCGTCGGGTTGAAATGCTCGCCGGCCGACGT-GCAGCCGTTGCTCGCGTCGCCGA 107778
| || ||||||| | ||| |||||| | || |||||| || |||||||
Sbjct 14710 GTGCGCGAACGGGTTGTAGTGCGCGCCGG-TGCTGTCGCAGCCCTTCGAGAGGTCGCCGT 14652
Query 107779 ACTCGTGCACGTGGAAGCCGTGC 107801
||||||| |||||||||||||||
Sbjct 14651 ACTCGTGTACGTGGAAGCCGTGC 14629
>seq3777
Length=32121
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/142 (77%), Gaps = 6/142 (4%)
Strand=Plus/Plus
Query 107663 CTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTC--G 107720
||||| |||||| |||||||||| ||||||| ||| | | ||||||||||||||| |
Sbjct 11188 CTTGATGTTGCCGAGGTCGCCGATGTGCCTGTTCTTGTCCGAGGGCGCGCCGTGGTCATG 11247
Query 107721 CGCTTCGTCGGGTTGAAATGCTCGCCGGCCGACGT-GCAGCCGTTGCTCGCGTCGCCGAA 107779
||| | |||||| |||| |||| | | || |||||| ||| ||||||| |
Sbjct 11248 CGCGAAG--GGGTTGTAATGAGCGCCCG-TGCTGTCGCAGCCTTTGGAGAGGTCGCCGTA 11304
Query 107780 CTCGTGCACGTGGAAGCCGTGC 107801
||||||||||||||| ||||||
Sbjct 11305 CTCGTGCACGTGGAAACCGTGC 11326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500148904244480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |