Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2686 136 4e-27 seq180 113 5e-20 seq3769 105 7e-18 seq3132 105 7e-18 seq3777 95.1 1e-14 >seq2686 Length=8065 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| |||| || ||| | || Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| || ||| ||||||| Sbjct 6729 GACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 6671 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| |||||||| |||||||| Sbjct 6670 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 6611 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| ||||| |||| || || Sbjct 6610 CATCCAGAAGGAGTCGACCCTCCA 6587 >seq180 Length=11059 Score = 113 bits (124), Expect = 5e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| ||||| || ||||| |||| |||||| | | |||| | | | |||| | || Sbjct 10930 CTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAA 10872 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || |||| ||||| ||||| ||||| ||||||| ||||| ||||| | |||||| Sbjct 10871 GTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGG 10812 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 || ||||| || |||| ||||| || |||||||||||||| ||||| | ||||| Sbjct 10811 AAAGCAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTACGCT 10752 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || |||| || ||| | | || |||| Sbjct 10751 CCACCTGGTCCTCCGTCTTCGTGGTGGCC 10723 >seq3769 Length=13229 Score = 105 bits (116), Expect = 7e-18 Identities = 204/289 (71%), Gaps = 18/289 (6%) Strand=Plus/Plus Query 107540 GAGGCCCAGATCGTCCCTGTCCGT-GTGCACGACCAGACTCCGTCCGATGATGCTGTGCG 107598 |||||| || |||||| | |||| ||||||||| | || || || | ||| || | Sbjct 9851 GAGGCCGAGGTCGTCCTCG-CCGTCGTGCACGACGACACCGCGGCCCAGGATCGTGCGGC 9909 Query 107599 GGCCGTACAAAGTCACGACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGGCC-C 107657 |||| | | || | ||||| ||| || ||| | |||| ||| || || || | Sbjct 9910 GGCCACAGAGGGTGATGACGCTGTCGGTGAAGTCGAT---GGTG-GCG-GTGCCGTCCTC 9964 Query 107658 GCCGACTT-GAGGTTGCCCAGGTCGCCGACGTGCCTGAT---CTCGGCGTCGGGCGCGCC 107713 |||| | | || |||||| |||||||||||||| | | | |||| ||| |||||| | Sbjct 9965 GCCGGCCTCGATGTTGCCGAGGTCGCCGACGTGGCGGTTCCGCTCG--GTC-GGCGCGGC 10021 Query 107714 GTGGTCGCGCTTCGTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGT---TGCTCGC 107770 ||| ||||| || |||||| | ||| |||||| || |||||||||| || Sbjct 10022 GTGCTCGCGGTTGAAGGGGTTGTAGTGCCCGCCGGTGGAGGTGCAGCCGTCGGTGAAGAT 10081 Query 107771 GTCGCCGAACTCGTGCACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCCG 107819 ||||||||| |||| ||||||||||||||| |||| | | |||||| Sbjct 10082 GTCGCCGAAGGCGTGGACGTGGAAGCCGTGCTTGCCGGGGGTGAGGCCG 10130 >seq3132 Length=21318 Score = 105 bits (116), Expect = 7e-18 Identities = 185/263 (70%), Gaps = 11/263 (4%) Strand=Plus/Minus Query 107543 GCCCAGATCGTCCCTGTCCGTGTGCACGACCAGACTCCGT--CCGATGATGCTGTGCGGG 107600 |||||| ||||| |||| | ||||| || ||||||| || |||| | ||||| | Sbjct 14884 GCCCAGGTCGTCGTTGTCGGCATGCACCAC--GACTCCGCGCCCCATGACGTTGTGCTCG 14827 Query 107601 CCGTACAAAGTCACGACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGGCCCG-C 107659 || ||| ||||| || |||| | | | | || || || ||| || || | Sbjct 14826 CCACACAGGCGCACGAGGCAGTCCTTGATGTCGATCTTGGCGACACCGT----GCTCGTC 14771 Query 107660 CGACTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTC 107719 || ||||| ||| || |||||||||| ||||| | ||| | || |||||||||||||| Sbjct 14770 CGCCTTGATGTTCCCGAGGTCGCCGATGTGCCGGTTCTTGTCGGACGGCGCGCCGTGGTC 14711 Query 107720 GCGCTTCGTCGGGTTGAAATGCTCGCCGGCCGACGT-GCAGCCGTTGCTCGCGTCGCCGA 107778 | || ||||||| | ||| |||||| | || |||||| || ||||||| Sbjct 14710 GTGCGCGAACGGGTTGTAGTGCGCGCCGG-TGCTGTCGCAGCCCTTCGAGAGGTCGCCGT 14652 Query 107779 ACTCGTGCACGTGGAAGCCGTGC 107801 ||||||| ||||||||||||||| Sbjct 14651 ACTCGTGTACGTGGAAGCCGTGC 14629 >seq3777 Length=32121 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/142 (77%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 107663 CTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTC--G 107720 ||||| |||||| |||||||||| ||||||| ||| | | ||||||||||||||| | Sbjct 11188 CTTGATGTTGCCGAGGTCGCCGATGTGCCTGTTCTTGTCCGAGGGCGCGCCGTGGTCATG 11247 Query 107721 CGCTTCGTCGGGTTGAAATGCTCGCCGGCCGACGT-GCAGCCGTTGCTCGCGTCGCCGAA 107779 ||| | |||||| |||| |||| | | || |||||| ||| ||||||| | Sbjct 11248 CGCGAAG--GGGTTGTAATGAGCGCCCG-TGCTGTCGCAGCCTTTGGAGAGGTCGCCGTA 11304 Query 107780 CTCGTGCACGTGGAAGCCGTGC 107801 ||||||||||||||| |||||| Sbjct 11305 CTCGTGCACGTGGAAACCGTGC 11326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500148904244480