Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_014564.2
Length=45413
Score E
Sequences producing significant alignments: (Bits) Value
seq1138 84.2 6e-12
>seq1138
Length=41311
Score = 84.2 bits (92), Expect = 6e-12
Identities = 158/228 (69%), Gaps = 6/228 (3%)
Strand=Plus/Minus
Query 1038 CGTGCCTCCGCGTTCGGGA--GCCGTCATTTCGACGGGCCTCTCGTTCGCTTTTCCGTCC 1095
||||||| |||| ||| | ||| || | ||||||||| || |||| | || |
Sbjct 26185 CGTGCCTGCGCG--CGGCAAGGCCCTCGTCTCGACGGGCATCAGCATCGCCGTCCCCGTC 26128
Query 1096 GGCTACTACGGTCGGGTGGCCCCGCGCTCGGGTCTGGCCGCGAAATTTTTGATAGACGTG 1155
||| ||||| || | || |||||||| || ||||| ||||| | ||| ||| |
Sbjct 26127 GGCACGTACGGGCGCATCGCGCCGCGCTCCGGCCTGGCGGCGAAGCACTCGATCGACACG 26068
Query 1156 GGGGCGGGCGTGGTGGATCCCGGTTACCGGGGGGAAGTGAAGGTGGTGCTGTTTAACC-T 1214
|| ||||||||| | || ||| ||||| || || || |||||| | ||||| ||| |
Sbjct 26067 GGCGCGGGCGTGATCGACGCCGACTACCGCGGCGAGGTCAAGGTGCTCCTGTTCAACTAT 26008
Query 1215 GTCGGACCACAATTTCAACGTGCGGGAGGGGGACAGGATCGCGCAGCT 1262
| || || | | ||| |||| |||| ||| | |||||||||||
Sbjct 26007 GGCG-ACGCCGACTTCGCCGTGTCCAAGGGCGACCGCATCGCGCAGCT 25961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145193409916500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |