Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_014564.2 Length=45413 Score E Sequences producing significant alignments: (Bits) Value seq1138 84.2 6e-12 >seq1138 Length=41311 Score = 84.2 bits (92), Expect = 6e-12 Identities = 158/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1038 CGTGCCTCCGCGTTCGGGA--GCCGTCATTTCGACGGGCCTCTCGTTCGCTTTTCCGTCC 1095 ||||||| |||| ||| | ||| || | ||||||||| || |||| | || | Sbjct 26185 CGTGCCTGCGCG--CGGCAAGGCCCTCGTCTCGACGGGCATCAGCATCGCCGTCCCCGTC 26128 Query 1096 GGCTACTACGGTCGGGTGGCCCCGCGCTCGGGTCTGGCCGCGAAATTTTTGATAGACGTG 1155 ||| ||||| || | || |||||||| || ||||| ||||| | ||| ||| | Sbjct 26127 GGCACGTACGGGCGCATCGCGCCGCGCTCCGGCCTGGCGGCGAAGCACTCGATCGACACG 26068 Query 1156 GGGGCGGGCGTGGTGGATCCCGGTTACCGGGGGGAAGTGAAGGTGGTGCTGTTTAACC-T 1214 || ||||||||| | || ||| ||||| || || || |||||| | ||||| ||| | Sbjct 26067 GGCGCGGGCGTGATCGACGCCGACTACCGCGGCGAGGTCAAGGTGCTCCTGTTCAACTAT 26008 Query 1215 GTCGGACCACAATTTCAACGTGCGGGAGGGGGACAGGATCGCGCAGCT 1262 | || || | | ||| |||| |||| ||| | ||||||||||| Sbjct 26007 GGCG-ACGCCGACTTCGCCGTGTCCAAGGGCGACCGCATCGCGCAGCT 25961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145193409916500