Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2414 188 9e-43 seq1321 125 9e-24 seq400 113 6e-20 seq2988 98.7 1e-15 seq252 91.5 2e-13 >seq2414 Length=19474 Score = 188 bits (208), Expect = 9e-43 Identities = 676/1045 (65%), Gaps = 23/1045 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| | ||||| || | |||||||||| || || | || || ||| Sbjct 1746 CCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGACCGTGT 1805 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| || || ||||| | | || |||| |||||| | || ||||||| Sbjct 1806 CATCGAGACCTATAACCTCATGTCGGAGCGCTAC-TTCACCCACGCTTCGCCTACCCTCT 1864 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||||||||| || | || ||||| ||| |||||| | || | ||||| | Sbjct 1865 TCAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACG 1924 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || || ||||||| |||| ||| |||| || || || ||||| ||| || | Sbjct 1925 ACTCGATTGATGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCG 1984 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 | ||||| || | |||||||| | || | ||||| | |||||| || ||||| Sbjct 1985 GCGGTATTGGTCTCCACATCCACAACATCCGTGCCAAG--GGCTCGTACATTGCCGGTAC 2042 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || ||| | || | ||||| |||| ||||| || | | | ||||| || || || Sbjct 2043 CAACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTA 2102 Query 111968 TGTAAACCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCAT 112020 || |||| ||||| | |||| || | | || |||| || ||||| | Sbjct 2103 CGTCGACCA----GGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTT 2158 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| || || | || ||||| || | || ||||| || | |||||| || Sbjct 2159 GGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGC 2218 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||| || ||||||| ||| |||||||| || || |||||||||||| | || |||| Sbjct 2219 GTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGG 2278 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 | ||| | ||| | ||| | || || | | || ||||| || |||| | | Sbjct 2279 CGGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACT 2338 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GAC 112258 |||||||| || || ||| |||||||| || | | | | | | || ||| Sbjct 2339 CGGAGGAGTTCGAGCAGCTTTACGAGAAGTACGA-GAGCGAGGGCAAGGGTC-GCAAGAC 2396 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 | | || | || | | ||| ||||| ||| || |||| || ||||||||| | Sbjct 2397 CAT-CAAGGCTCAGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTC 2455 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | ||||| ||||| |||||| ||| ||| || || || | | || | Sbjct 2456 CCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCA 2515 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| ||||||||||| || || ||| | || | | || ||| || | Sbjct 2516 TCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTGACGAGGTCGCCG 2575 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | || ||||| || || || ||||| ||| | ||| || ||| | |||| | | Sbjct 2576 TCTGCAACCTTGCCTCGATTGCTCTTCCCGCCTTTGTCGACTTTGAGGCTCAGACTTACG 2635 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | || || ||||| | || || ||||| || ||||| || || || Sbjct 2636 ACTTCAAGAAGCTGCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCATCA 2695 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | | || | |||||||| || ||||| || || || ||| | ||||| || | | Sbjct 2696 CTCGCAACTACTACCCCGTCAAGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCGTCG 2755 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGA 112642 |||||||||| || |||||||| || Sbjct 2756 GTCTCGGTGTTCAGGGTCTCGCCGA 2780 >seq1321 Length=24731 Score = 125 bits (138), Expect = 9e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 102182 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 102241 ||| || |||| ||||||||||||||||| ||||||||||| || || ||| || || Sbjct 19047 GCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCAT 19106 Query 102242 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 102301 | |||||||||||||| ||||| |||| || ||| ||||||||||||||| ||||| Sbjct 19107 CTTCTGGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTC 19166 Query 102302 TCGTGACGAGGG 102313 || |||||||| Sbjct 19167 GCGCGACGAGGG 19178 >seq400 Length=29784 Score = 113 bits (124), Expect = 6e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATG-CATGGTTGATTTTCGCGAGCGA 16113 ||| || | ||| || ||||| || |||||||||||| || || | | ||| | ||| Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTC-CTAGCCT 15553 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 |||||||||| || |||||| || || ||||| ||||||||||| || || | | Sbjct 15554 GCGCAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613 Query 16174 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 |||| || ||||||||| || | ||||| || |||| ||| || || | Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 ||||||| ||||| || ||||| |||| ||| || || ||||||||||| ||| Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729 >seq2988 Length=9850 Score = 98.7 bits (108), Expect = 1e-15 Identities = 322/498 (65%), Gaps = 2/498 (0%) Strand=Plus/Plus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 |||| ||||||||||| || | || || | ||||| || || | ||||||| |||| Sbjct 1897 AACCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGT 1956 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958 | || ||||| ||| | | || || || | | ||| | |||| || || || | Sbjct 1957 ACTCGGGCTCGATGCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCGG 2016 Query 175959 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 176017 ||| || | |||| |||| | | || || || || || | || | Sbjct 2017 GATGGAACACAGCGCGGGTCATCGCGGACGTG-TTGGTGAAAATGTAACGCGCGCTGGCA 2075 Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 || ||||| |||||| | ||||||||| |||||||| ||||| || | ||||| Sbjct 2076 GCGTCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 2135 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137 ||||| |||| | | | || | |||||| || | | ||| ||| Sbjct 2136 TTGTTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGCAGTCAGACTCTGTTCG 2195 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197 |||||||||||||| | ||||| | || | | | | |||||| || || ||||| Sbjct 2196 CCGTGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGATCTCC 2255 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 | ||||||||| | ||| || ||||||| |||||||| || |||||||| || Sbjct 2256 TTCTTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGAGGCCG 2315 Query 176258 TCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTG 176317 || || | || ||| |||||| | ||| |||| |||| || || |||||| Sbjct 2316 TCGGCAACCGATGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAGGATCAGCTCCTTG 2375 Query 176318 TGTACAAAGTTTGAGATG 176335 | ||||||| |||||| Sbjct 2376 TTGACAAAGTCCGAGATG 2393 >seq252 Length=28045 Score = 91.5 bits (100), Expect = 2e-13 Identities = 322/498 (65%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 |||| ||||| ||||| || | |||||| | ||||| ||| || | || |||| |||| Sbjct 5771 AACCGGTACCAATACCGTCCGCACCGTTGATGAGAATCATCGGAACAGTCGGCAAGTAGT 5830 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958 | || ||||| || | | || || ||| | | ||| | |||| ||| || || | Sbjct 5831 ACTCGGGCTCGATACGCTGGCCGTCCTCAACAAGGTAGGTAAGAAGTGGGTCGTCCGCTG 5890 Query 175959 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 176017 | | || | |||| |||| | | || || || || || | | | Sbjct 5891 GGTGGAACACAGCGCGGGTCATCGCGGAGGTG-TTGGTGAAAATGTAACGAGCGCTGGCA 5949 Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 || ||||| || ||| | ||||||||| |||||||| ||||| || | ||||| Sbjct 5950 GCGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 6009 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137 ||||| || | | | | ||||| || |||||| ||| | | |||| Sbjct 6010 TTGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCA 6069 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTC 176196 ||||||||||| || | ||||| | || | || |||| ||| || || || ||||| Sbjct 6070 CCGTGGTGGTAGGCCGTGTTCTCGGACACGTA-ACCACCAAGCTGTGCGACCTTAATCTC 6128 Query 176197 ATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 176256 | |||||| || | ||| || |||||||||||||||| || |||||| || || Sbjct 6129 CTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTAGGCC 6188 Query 176257 ATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTT 176316 || |||| | || |||||| | |||||||| |||| | ||| ||||| Sbjct 6189 GTCGGCCACCGAGGGAATGGAACGCATGTTGTCCGCCATCGAGAAGAGAATGAGCTCCTT 6248 Query 176317 GTGTACAAAGTTTGAGAT 176334 || || |||| ||||| Sbjct 6249 GTTGACGAAGTCAGAGAT 6266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620712744031840