Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 188 9e-43
seq1321 125 9e-24
seq400 113 6e-20
seq2988 98.7 1e-15
seq252 91.5 2e-13
>seq2414
Length=19474
Score = 188 bits (208), Expect = 9e-43
Identities = 676/1045 (65%), Gaps = 23/1045 (2%)
Strand=Plus/Plus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670
||| ||| ||||| | ||||| || | |||||||||| || || | || || |||
Sbjct 1746 CCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGACCGTGT 1805
Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729
| ||||| || || ||||| | | || |||| |||||| | || |||||||
Sbjct 1806 CATCGAGACCTATAACCTCATGTCGGAGCGCTAC-TTCACCCACGCTTCGCCTACCCTCT 1864
Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789
||||||||||||| || | || ||||| ||| |||||| | || | ||||| |
Sbjct 1865 TCAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACG 1924
Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849
| || || ||||||| |||| ||| |||| || || || ||||| ||| || |
Sbjct 1925 ACTCGATTGATGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCG 1984
Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907
| ||||| || | |||||||| | || | ||||| | |||||| || |||||
Sbjct 1985 GCGGTATTGGTCTCCACATCCACAACATCCGTGCCAAG--GGCTCGTACATTGCCGGTAC 2042
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
|| ||| | || | ||||| |||| ||||| || | | | ||||| || || ||
Sbjct 2043 CAACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTA 2102
Query 111968 TGTAAACCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCAT 112020
|| |||| ||||| | |||| || | | || |||| || ||||| |
Sbjct 2103 CGTCGACCA----GGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTT 2158
Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080
||||||| || || | || ||||| || | || ||||| || | |||||| ||
Sbjct 2159 GGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGC 2218
Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140
| ||| || ||||||| ||| |||||||| || || |||||||||||| | || ||||
Sbjct 2219 GTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGG 2278
Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200
| ||| | ||| | ||| | || || | | || ||||| || |||| | |
Sbjct 2279 CGGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACT 2338
Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GAC 112258
|||||||| || || ||| |||||||| || | | | | | | || |||
Sbjct 2339 CGGAGGAGTTCGAGCAGCTTTACGAGAAGTACGA-GAGCGAGGGCAAGGGTC-GCAAGAC 2396
Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317
| | || | || | | ||| ||||| ||| || |||| || ||||||||| |
Sbjct 2397 CAT-CAAGGCTCAGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTC 2455
Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377
| | ||||| ||||| |||||| ||| ||| || || || | | || |
Sbjct 2456 CCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCA 2515
Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437
||||| ||||||||||| || || ||| | || | | || ||| || |
Sbjct 2516 TCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTGACGAGGTCGCCG 2575
Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497
| || ||||| || || || ||||| ||| | ||| || ||| | |||| | |
Sbjct 2576 TCTGCAACCTTGCCTCGATTGCTCTTCCCGCCTTTGTCGACTTTGAGGCTCAGACTTACG 2635
Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557
| | | || || ||||| | || || ||||| || ||||| || || ||
Sbjct 2636 ACTTCAAGAAGCTGCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCATCA 2695
Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617
| | || | |||||||| || ||||| || || || ||| | ||||| || | |
Sbjct 2696 CTCGCAACTACTACCCCGTCAAGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCGTCG 2755
Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGA 112642
|||||||||| || |||||||| ||
Sbjct 2756 GTCTCGGTGTTCAGGGTCTCGCCGA 2780
>seq1321
Length=24731
Score = 125 bits (138), Expect = 9e-24
Identities = 107/132 (81%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 102182 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 102241
||| || |||| ||||||||||||||||| ||||||||||| || || ||| || ||
Sbjct 19047 GCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCAT 19106
Query 102242 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 102301
| |||||||||||||| ||||| |||| || ||| ||||||||||||||| |||||
Sbjct 19107 CTTCTGGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTC 19166
Query 102302 TCGTGACGAGGG 102313
|| ||||||||
Sbjct 19167 GCGCGACGAGGG 19178
>seq400
Length=29784
Score = 113 bits (124), Expect = 6e-20
Identities = 168/236 (71%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATG-CATGGTTGATTTTCGCGAGCGA 16113
||| || | ||| || ||||| || |||||||||||| || || | | ||| | |||
Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTC-CTAGCCT 15553
Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173
|||||||||| || |||||| || || ||||| ||||||||||| || || | |
Sbjct 15554 GCGCAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613
Query 16174 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
|||| || ||||||||| || | ||||| || |||| ||| || || |
Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673
Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289
||||||| ||||| || ||||| |||| ||| || || ||||||||||| |||
Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729
>seq2988
Length=9850
Score = 98.7 bits (108), Expect = 1e-15
Identities = 322/498 (65%), Gaps = 2/498 (0%)
Strand=Plus/Plus
Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898
|||| ||||||||||| || | || || | ||||| || || | ||||||| ||||
Sbjct 1897 AACCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGT 1956
Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958
| || ||||| ||| | | || || || | | ||| | |||| || || || |
Sbjct 1957 ACTCGGGCTCGATGCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCGG 2016
Query 175959 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 176017
||| || | |||| |||| | | || || || || || | || |
Sbjct 2017 GATGGAACACAGCGCGGGTCATCGCGGACGTG-TTGGTGAAAATGTAACGCGCGCTGGCA 2075
Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077
|| ||||| |||||| | ||||||||| |||||||| ||||| || | |||||
Sbjct 2076 GCGTCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 2135
Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137
||||| |||| | | | || | |||||| || | | ||| |||
Sbjct 2136 TTGTTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGCAGTCAGACTCTGTTCG 2195
Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197
|||||||||||||| | ||||| | || | | | | |||||| || || |||||
Sbjct 2196 CCGTGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGATCTCC 2255
Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257
| ||||||||| | ||| || ||||||| |||||||| || |||||||| ||
Sbjct 2256 TTCTTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGAGGCCG 2315
Query 176258 TCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTG 176317
|| || | || ||| |||||| | ||| |||| |||| || || ||||||
Sbjct 2316 TCGGCAACCGATGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAGGATCAGCTCCTTG 2375
Query 176318 TGTACAAAGTTTGAGATG 176335
| ||||||| ||||||
Sbjct 2376 TTGACAAAGTCCGAGATG 2393
>seq252
Length=28045
Score = 91.5 bits (100), Expect = 2e-13
Identities = 322/498 (65%), Gaps = 4/498 (1%)
Strand=Plus/Plus
Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898
|||| ||||| ||||| || | |||||| | ||||| ||| || | || |||| ||||
Sbjct 5771 AACCGGTACCAATACCGTCCGCACCGTTGATGAGAATCATCGGAACAGTCGGCAAGTAGT 5830
Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958
| || ||||| || | | || || ||| | | ||| | |||| ||| || || |
Sbjct 5831 ACTCGGGCTCGATACGCTGGCCGTCCTCAACAAGGTAGGTAAGAAGTGGGTCGTCCGCTG 5890
Query 175959 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 176017
| | || | |||| |||| | | || || || || || | | |
Sbjct 5891 GGTGGAACACAGCGCGGGTCATCGCGGAGGTG-TTGGTGAAAATGTAACGAGCGCTGGCA 5949
Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077
|| ||||| || ||| | ||||||||| |||||||| ||||| || | |||||
Sbjct 5950 GCGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 6009
Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137
||||| || | | | | ||||| || |||||| ||| | | ||||
Sbjct 6010 TTGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCA 6069
Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTC 176196
||||||||||| || | ||||| | || | || |||| ||| || || || |||||
Sbjct 6070 CCGTGGTGGTAGGCCGTGTTCTCGGACACGTA-ACCACCAAGCTGTGCGACCTTAATCTC 6128
Query 176197 ATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 176256
| |||||| || | ||| || |||||||||||||||| || |||||| || ||
Sbjct 6129 CTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTAGGCC 6188
Query 176257 ATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTT 176316
|| |||| | || |||||| | |||||||| |||| | ||| |||||
Sbjct 6189 GTCGGCCACCGAGGGAATGGAACGCATGTTGTCCGCCATCGAGAAGAGAATGAGCTCCTT 6248
Query 176317 GTGTACAAAGTTTGAGAT 176334
|| || |||| |||||
Sbjct 6249 GTTGACGAAGTCAGAGAT 6266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620712744031840
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