Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 255 7e-63
seq400 170 2e-37
seq2694 98.7 1e-15
>seq2414
Length=19474
Score = 255 bits (282), Expect = 7e-63
Identities = 626/938 (67%), Gaps = 27/938 (3%)
Strand=Plus/Minus
Query 110104 TCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCA 110163
|| || |||||||||||||||||||| | |||||| || |||||| ||| |||||
Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721
Query 110164 GTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTC 110223
| |||||||| ||||||| ||||||| | | ||| ||||| || || |||
Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661
Query 110224 GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGG 110283
||||| || || || || | | | ||| | || | | ||| | |||| | |||
Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601
Query 110284 AGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAA 110341
|||||||| || ||||| ||||| || | |||||| | || | ||| || | |
Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTC--AGGCGACGAGTACTCAATGA 2543
Query 110342 TTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401
| || || || | |||||| ||| ||| || | || || ||| ||||| |||||||
Sbjct 2542 TCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGT 2483
Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461
|| || ||||| ||||||||| | || |||||| || ||||| | || ||| || |
Sbjct 2482 TGGCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAG 2423
Query 110462 CCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT--CCTC---CTCGT 110515
| ||| | | || | | | | || | |||| |||| |||| |||||
Sbjct 2422 CGAACCAAAGCTTCTGAGCC-----TTGATGGTCTTGCGA-CCCTTGCCCTCGCTCTCGT 2369
Query 110516 ACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGT 110575
|||| ||| | | ||| || |||| || || || | ||| || || |
Sbjct 2368 ACTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGG 2309
Query 110576 CGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAA 110635
|||| || | ||||| ||| | || || |||| || | ||||||||| ||||| || |
Sbjct 2308 CGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGA 2249
Query 110636 TCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTA 110695
|||| | || |||| ||||||||| ||| ||| || | || ||||| ||| |
Sbjct 2248 TCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGA 2189
Query 110696 GCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC-- 110753
| || | ||||| | || || | |||||| || ||||| |||| || | || ||
Sbjct 2188 GGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGG 2129
Query 110754 ----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCA 110809
||| | | || |||||| || || || || ||||||| | | | | |||||
Sbjct 2128 GGCGCTT--GTTG-CCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCA 2072
Query 110810 TAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAA 110869
| |||| || || | ||| | ||| || ||||| ||| || |||||||| |
Sbjct 2071 TGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGA 2012
Query 110870 TGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTG 110928
||| |||||| || | ||||||||| || || ||| || || || || ||| ||
Sbjct 2011 TGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCT-TG 1953
Query 110929 AGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGAC 110988
|| || | || || ||||||||||| || |||| |||| | || |||||||| |||
Sbjct 1952 AGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGAC 1893
Query 110989 ATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026
||||||| |||| || || || |||||||| |||||
Sbjct 1892 ATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGG 1855
>seq400
Length=29784
Score = 170 bits (188), Expect = 2e-37
Identities = 336/487 (69%), Gaps = 25/487 (5%)
Strand=Plus/Plus
Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556
|||| || |||||||| || || || | |||||| ||||||| ||| ||||||
Sbjct 15316 ATCTGTCGGTCGAAACGGCCAGGACGCATGAGAGCAGGGTCAAGAACGTCGGGACGGTTG 15375
Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTGT---CGAAACCGTCCATTTCTGTGAGA 11613
||| |||| | || || | | ||| |||| ||||||||||||| || ||||
Sbjct 15376 GTACCGGCGAGCACGACGACGTG---CTCCTTGTTACCGAAACCGTCCATCTCGACGAGA 15432
Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCA---TACCACC--TGCCGAAC 11668
|||||||| | |||| || ||||| |||||| | | | || || |||| ||
Sbjct 15433 AGCTGGTTCAACGTCGACTCGCGCTCGTCGTTGCCGCCAAAGTTGCCGCCCTTGCC--AC 15490
Query 11669 GCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728
|| |||||||| ||||| ||||| |||||||| ||||| || ||| | |
Sbjct 15491 GCGCCTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTCCTAG 15550
Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788
|||| | || || ||||| |||||| | || ||||| || |||||||| ||||| |
Sbjct 15551 CCTGCGCAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACT 15610
Query 11789 TTGCGGCA--GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845
||| | | | || || | |||||| || || | |||||| || |||| || |
Sbjct 15611 ---CGGAACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAA 15667
Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905
|||| |||||||| ||||| || | ||| | || | |||||| || || ||||||||||
Sbjct 15668 GGAGGGTCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCAC 15727
Query 11906 CA--CTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCT 11962
|| |||| | | | | | |||| ||||||||| | |||| |||| || ||||
Sbjct 15728 CAAGCTTCTCGTACTTGGTC---GGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCT 15784
Query 11963 CCTTGGC 11969
|||||||
Sbjct 15785 CCTTGGC 15791
>seq2694
Length=60976
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 11759 CTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACAT 11818
|||||||||| || |||||||| | || | | |||| | ||| || || |
Sbjct 31390 CTCCAACACCGACAAACATCTCGTCAAAAGACGAGCCAGAGGCGAAGAGGAAAGGGACCT 31449
Query 11819 TAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGA 11878
| ||| ||||||| ||| || || || | |||||||| |||||||| | ||||| ||
Sbjct 31450 CGGCCTCGCCAGCGACGGCGCGGGCAAGCATCGTCTTACCAGTACCAGGAGGACCAGTGA 31509
Query 11879 GAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGA 11938
| || | || ||||| |||| ||||| || | ||| || ||||||||||
Sbjct 31510 GGAGAACACCCTTGGGGAGCTTGCCACCAAGAGTGGAGAACTTCTCGGGATTCTTGAGGA 31569
Query 11939 AGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGG 11992
| || || ||||||||||| |||| |||||| |||| ||| | |||||||
Sbjct 31570 ACTCGACGATCTCCTCAAGCTCCTGCTTGGCCTCCTCGACACCATGGACATCGG 31623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588947861671600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |