Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2414 255 7e-63 seq400 170 2e-37 seq2694 98.7 1e-15 >seq2414 Length=19474 Score = 255 bits (282), Expect = 7e-63 Identities = 626/938 (67%), Gaps = 27/938 (3%) Strand=Plus/Minus Query 110104 TCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCA 110163 || || |||||||||||||||||||| | |||||| || |||||| ||| ||||| Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721 Query 110164 GTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTC 110223 | |||||||| ||||||| ||||||| | | ||| ||||| || || ||| Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661 Query 110224 GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGG 110283 ||||| || || || || | | | ||| | || | | ||| | |||| | ||| Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601 Query 110284 AGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAA 110341 |||||||| || ||||| ||||| || | |||||| | || | ||| || | | Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTC--AGGCGACGAGTACTCAATGA 2543 Query 110342 TTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401 | || || || | |||||| ||| ||| || | || || ||| ||||| ||||||| Sbjct 2542 TCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGT 2483 Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461 || || ||||| ||||||||| | || |||||| || ||||| | || ||| || | Sbjct 2482 TGGCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAG 2423 Query 110462 CCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT--CCTC---CTCGT 110515 | ||| | | || | | | | || | |||| |||| |||| ||||| Sbjct 2422 CGAACCAAAGCTTCTGAGCC-----TTGATGGTCTTGCGA-CCCTTGCCCTCGCTCTCGT 2369 Query 110516 ACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGT 110575 |||| ||| | | ||| || |||| || || || | ||| || || | Sbjct 2368 ACTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGG 2309 Query 110576 CGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAA 110635 |||| || | ||||| ||| | || || |||| || | ||||||||| ||||| || | Sbjct 2308 CGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGA 2249 Query 110636 TCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTA 110695 |||| | || |||| ||||||||| ||| ||| || | || ||||| ||| | Sbjct 2248 TCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGA 2189 Query 110696 GCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC-- 110753 | || | ||||| | || || | |||||| || ||||| |||| || | || || Sbjct 2188 GGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGG 2129 Query 110754 ----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCA 110809 ||| | | || |||||| || || || || ||||||| | | | | ||||| Sbjct 2128 GGCGCTT--GTTG-CCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCA 2072 Query 110810 TAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAA 110869 | |||| || || | ||| | ||| || ||||| ||| || |||||||| | Sbjct 2071 TGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGA 2012 Query 110870 TGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTG 110928 ||| |||||| || | ||||||||| || || ||| || || || || ||| || Sbjct 2011 TGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCT-TG 1953 Query 110929 AGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGAC 110988 || || | || || ||||||||||| || |||| |||| | || |||||||| ||| Sbjct 1952 AGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGAC 1893 Query 110989 ATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 ||||||| |||| || || || |||||||| ||||| Sbjct 1892 ATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGG 1855 >seq400 Length=29784 Score = 170 bits (188), Expect = 2e-37 Identities = 336/487 (69%), Gaps = 25/487 (5%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || |||||||| || || || | |||||| ||||||| ||| |||||| Sbjct 15316 ATCTGTCGGTCGAAACGGCCAGGACGCATGAGAGCAGGGTCAAGAACGTCGGGACGGTTG 15375 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTGT---CGAAACCGTCCATTTCTGTGAGA 11613 ||| |||| | || || | | ||| |||| ||||||||||||| || |||| Sbjct 15376 GTACCGGCGAGCACGACGACGTG---CTCCTTGTTACCGAAACCGTCCATCTCGACGAGA 15432 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCA---TACCACC--TGCCGAAC 11668 |||||||| | |||| || ||||| |||||| | | | || || |||| || Sbjct 15433 AGCTGGTTCAACGTCGACTCGCGCTCGTCGTTGCCGCCAAAGTTGCCGCCCTTGCC--AC 15490 Query 11669 GCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 || |||||||| ||||| ||||| |||||||| ||||| || ||| | | Sbjct 15491 GCGCCTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTCCTAG 15550 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 |||| | || || ||||| |||||| | || ||||| || |||||||| ||||| | Sbjct 15551 CCTGCGCAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACT 15610 Query 11789 TTGCGGCA--GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 ||| | | | || || | |||||| || || | |||||| || |||| || | Sbjct 15611 ---CGGAACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAA 15667 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 |||| |||||||| ||||| || | ||| | || | |||||| || || |||||||||| Sbjct 15668 GGAGGGTCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCAC 15727 Query 11906 CA--CTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCT 11962 || |||| | | | | | |||| ||||||||| | |||| |||| || |||| Sbjct 15728 CAAGCTTCTCGTACTTGGTC---GGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCT 15784 Query 11963 CCTTGGC 11969 ||||||| Sbjct 15785 CCTTGGC 15791 >seq2694 Length=60976 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 11759 CTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACAT 11818 |||||||||| || |||||||| | || | | |||| | ||| || || | Sbjct 31390 CTCCAACACCGACAAACATCTCGTCAAAAGACGAGCCAGAGGCGAAGAGGAAAGGGACCT 31449 Query 11819 TAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGA 11878 | ||| ||||||| ||| || || || | |||||||| |||||||| | ||||| || Sbjct 31450 CGGCCTCGCCAGCGACGGCGCGGGCAAGCATCGTCTTACCAGTACCAGGAGGACCAGTGA 31509 Query 11879 GAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGA 11938 | || | || ||||| |||| ||||| || | ||| || |||||||||| Sbjct 31510 GGAGAACACCCTTGGGGAGCTTGCCACCAAGAGTGGAGAACTTCTCGGGATTCTTGAGGA 31569 Query 11939 AGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGG 11992 | || || ||||||||||| |||| |||||| |||| ||| | ||||||| Sbjct 31570 ACTCGACGATCTCCTCAAGCTCCTGCTTGGCCTCCTCGACACCATGGACATCGG 31623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588947861671600