Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 190 2e-43
seq1321 89.7 6e-13
seq400 87.8 2e-12
>seq2414
Length=19474
Score = 190 bits (210), Expect = 2e-43
Identities = 671/1039 (65%), Gaps = 27/1039 (3%)
Strand=Plus/Minus
Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339
|| |||||||| |||||||| | ||| | || | ||| ||||| || || || || ||
Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721
Query 106340 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399
|| ||||| || | || | ||||| ||| || || ||||| || | |||
Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661
Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 106459
||||| || || || || | | || |||| ||| ||| | |||| | |||
Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601
Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519
|| || || || || | ||||| || || ||| || | |||||| | ||
Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATC 2541
Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579
|| || || | |||||| ||| || || || | | || ||||| ||| ||||
Sbjct 2540 TCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTG 2481
Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639
|| ||||||||||||||| |||| || ||||| ||||| | || ||| || ||
Sbjct 2480 GCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCG 2421
Query 106640 TTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTACTT 106695
||| | | || | | || | |||| ||| ||| | || ||| |||||||||
Sbjct 2420 AACCAAAGCTTCTGAGCCTTG----ATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTT 2365
Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCT 106753
||| || || |||||||| | | | |||||| || || || || | |
Sbjct 2364 CTCGTAAAGCTGCTCGAACTCCTC--CGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCG 2307
Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813
|| || | || | ||| | || || |||| || ||||||||||| ||||| || |||
Sbjct 2306 GGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATC 2247
Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873
|| |||| | ||||| || | || ||| || | || ||||| || |
Sbjct 2246 CAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2187
Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---- 106929
|| ||||| || | || || |||||||| ||||| || |||| || | | ||
Sbjct 2186 TCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGG 2127
Query 106930 --CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986
||| | | ||||| | | || | || || || ||||| | | | || |||||
Sbjct 2126 CGCTTGTTGCCGCCCTGGTCGA----CGTAACGAGCAGTGGCATCGTACGCACGGAGCAT 2071
Query 106987 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTC 107044
|||| ||||| | || | ||| || || || ||| ||||| | |||| |
Sbjct 2070 GGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCACGG 2013
Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104
| | |||||||| | |||||||| || || ||| ||||| || || || | |
Sbjct 2012 ATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTG 1953
Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164
|| || | ||||| || | || ||||| ||||| |||||| |||||||||| |||
Sbjct 1952 AGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGAC 1893
Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224
||||| | || |||||||| ||||||||||| || | ||||| |||| |
Sbjct 1892 ATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGC 1833
Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284
| ||||| || || ||||| | |||| || |||| || |||||||| |||| |
Sbjct 1832 TCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACG 1773
Query 107285 GCCACACGCATAAACATGT 107303
| ||||||||||| |||||
Sbjct 1772 GACACACGCATAAGCATGT 1754
>seq1321
Length=24731
Score = 89.7 bits (98), Expect = 6e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351
||||| || || || || || || || |||||| ||||| |||| ||||| ||||||
Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119
Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411
|| | ||| | || || |||||| || ||||||||||| ||||| |||||||||||
Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059
Query 117412 GC 117413
||
Sbjct 19058 GC 19057
>seq400
Length=29784
Score = 87.8 bits (96), Expect = 2e-12
Identities = 164/239 (69%), Gaps = 8/239 (3%)
Strand=Plus/Plus
Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATA-CATGGTTGATTTTC---GCGGG 9417
||| || | ||| || ||||| || |||||||| || || || | | ||| || |
Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTCCTAGCCTG 15554
Query 9418 CGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9477
|| |||||||||| || || | || || ||||| ||||||||||| || || |
Sbjct 15555 CG----CAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACT 15610
Query 9478 TTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 9537
| |||| || ||||||||| || | ||||| || |||| ||| || |
Sbjct 15611 CGGAACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGA 15670
Query 9538 GAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596
| |||||||| ||||| || ||||| |||| ||| || || ||||||||||| |||
Sbjct 15671 GGGTCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589952613667280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |