Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2686 127 5e-24 seq180 122 2e-22 seq238 111 3e-19 >seq2686 Length=8065 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || || || ||||| || | ||| || | || || || Sbjct 6580 AACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 6639 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 6640 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 6699 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| || |||||||| || ||||| || ||||| | ||||| Sbjct 6700 GATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTT 6759 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 6760 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 6789 >seq180 Length=11059 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | ||| || | || || ||| Sbjct 10743 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACCGTCCTCG 10802 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| |||||||| || || ||||| || Sbjct 10803 AGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGG 10862 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||||||||| || || || || || | |||||| Sbjct 10863 ATCTTCGACTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTTG 10922 Query 195112 CCTGT 195116 || || Sbjct 10923 CCGGT 10927 >seq238 Length=11627 Score = 111 bits (122), Expect = 3e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| || | ||||| | || || ||||||||||| || ||||||||||| || || | Sbjct 11580 TGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCT 11521 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| ||||| || || || ||||| || ||||| ||||||||| || |||||||||| Sbjct 11520 GGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTCGACTTGACGTTGTCGATGGTGTCCG 11461 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || || |||||||| | ||||| || || Sbjct 11460 AGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 11427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109427269379474