Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_018874.1
Length=211518
Score E
Sequences producing significant alignments: (Bits) Value
seq2884 93.3 6e-14
seq2424 93.3 6e-14
>seq2884
Length=9023
Score = 93.3 bits (102), Expect = 6e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 197530 TGAAAGGGAAGGATCTGCTTCTTCTCAACGTCCCAAGCAACTGCCTCAGCGTCCAAGATG 197589
|| || || |||| || ||||| ||||| ||| | ||||| ||||| ||| | | |
Sbjct 6080 TGGAACGGGAGGAGCTTCTTCTCCTCAATGTCATAGGCAACCGCCTCGCAGTCGAGAACG 6021
Query 197590 AAAGACTTCACTCCCTCGTTGATCGATTGGGGAAGCCTATTGATTATGTCGGGGTACTTC 197649
|| ||||| || ||||| ||||| | | |||| | || | |||||| |||||
Sbjct 6020 AAGGACTTGACGCCCTCCTTGATGCAGCGAGGAATTTGCTCGACGAGGTCGGGATACTTG 5961
Query 197650 TCGGTGTTATTTTCAGAGTTGCGGCTAAAAATTCTAATCTTCCCTCCCTCCATGTAGTGA 197709
|| | | || || |||||||| || || | ||| | || | |||| ||||
Sbjct 5960 GCGCTCATGTTCTCCGAGTTGCGACTGAACACCGCGATCGTGCCGTCTTCCAGCAAGTGC 5901
Query 197710 ATCTGAGCCCTCTCTCCGTCATACTTGTACTCGCAAGAAAA 197750
| |||||| | |||||||||||| ||||||||||| | |||
Sbjct 5900 ACCTGAGCGCGCTCTCCGTCATATTTGTACTCGCACGTAAA 5860
>seq2424
Length=12092
Score = 93.3 bits (102), Expect = 6e-14
Identities = 153/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 197530 TGAAAGGGAAGGATCTGCTTCTTCTCAACGTCCCAAGCAACTGCCTCAGCGTCCAAGATG 197589
|| || ||||| | || ||||| ||||| ||| | || || |||||| ||| | | |
Sbjct 2470 TGGAATGGAAGAAGCTTCTTCTCCTCAATGTCGTAGGCGACGGCCTCACAGTCGAGAACG 2411
Query 197590 AAAGACTTCACTCCCTCGTTGATCGATTGGGGAAGCCTATTGATTATGTCGGGGTACTTC 197649
|| ||||| || ||||| ||||| | |||||| | | || | || ||||||||
Sbjct 2410 AACGACTTGACGCCCTCCTTGATGCAGCGGGGAATCTGCTCGACGAGATCTGGGTACTTG 2351
Query 197650 TCGGTGTTATTTTCAGAGTTGCGGCTAAAAATTCTAATCTTCCCTCCCTCCATGTAG-TG 197708
|| | | || || |||||||| ||||| | ||| | || | |||| | || ||
Sbjct 2350 GCGCTCATGTTCTCCGAGTTGCGACTAAACACGGCGATCGTACCGTCTTCCA-GAAGATG 2292
Query 197709 AATCTGAGCCCTCTCTCCGTCATACTTGTACTCGCAAG 197746
| |||||| | ||| ||||| ||||||||||||||||
Sbjct 2291 CACCTGAGCGCGCTCGCCGTCGTACTTGTACTCGCAAG 2254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 676697269243360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |