Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq2884 93.3 6e-14 seq2424 93.3 6e-14 >seq2884 Length=9023 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 197530 TGAAAGGGAAGGATCTGCTTCTTCTCAACGTCCCAAGCAACTGCCTCAGCGTCCAAGATG 197589 || || || |||| || ||||| ||||| ||| | ||||| ||||| ||| | | | Sbjct 6080 TGGAACGGGAGGAGCTTCTTCTCCTCAATGTCATAGGCAACCGCCTCGCAGTCGAGAACG 6021 Query 197590 AAAGACTTCACTCCCTCGTTGATCGATTGGGGAAGCCTATTGATTATGTCGGGGTACTTC 197649 || ||||| || ||||| ||||| | | |||| | || | |||||| ||||| Sbjct 6020 AAGGACTTGACGCCCTCCTTGATGCAGCGAGGAATTTGCTCGACGAGGTCGGGATACTTG 5961 Query 197650 TCGGTGTTATTTTCAGAGTTGCGGCTAAAAATTCTAATCTTCCCTCCCTCCATGTAGTGA 197709 || | | || || |||||||| || || | ||| | || | |||| |||| Sbjct 5960 GCGCTCATGTTCTCCGAGTTGCGACTGAACACCGCGATCGTGCCGTCTTCCAGCAAGTGC 5901 Query 197710 ATCTGAGCCCTCTCTCCGTCATACTTGTACTCGCAAGAAAA 197750 | |||||| | |||||||||||| ||||||||||| | ||| Sbjct 5900 ACCTGAGCGCGCTCTCCGTCATATTTGTACTCGCACGTAAA 5860 >seq2424 Length=12092 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 197530 TGAAAGGGAAGGATCTGCTTCTTCTCAACGTCCCAAGCAACTGCCTCAGCGTCCAAGATG 197589 || || ||||| | || ||||| ||||| ||| | || || |||||| ||| | | | Sbjct 2470 TGGAATGGAAGAAGCTTCTTCTCCTCAATGTCGTAGGCGACGGCCTCACAGTCGAGAACG 2411 Query 197590 AAAGACTTCACTCCCTCGTTGATCGATTGGGGAAGCCTATTGATTATGTCGGGGTACTTC 197649 || ||||| || ||||| ||||| | |||||| | | || | || |||||||| Sbjct 2410 AACGACTTGACGCCCTCCTTGATGCAGCGGGGAATCTGCTCGACGAGATCTGGGTACTTG 2351 Query 197650 TCGGTGTTATTTTCAGAGTTGCGGCTAAAAATTCTAATCTTCCCTCCCTCCATGTAG-TG 197708 || | | || || |||||||| ||||| | ||| | || | |||| | || || Sbjct 2350 GCGCTCATGTTCTCCGAGTTGCGACTAAACACGGCGATCGTACCGTCTTCCA-GAAGATG 2292 Query 197709 AATCTGAGCCCTCTCTCCGTCATACTTGTACTCGCAAG 197746 | |||||| | ||| ||||| |||||||||||||||| Sbjct 2291 CACCTGAGCGCGCTCGCCGTCGTACTTGTACTCGCAAG 2254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676697269243360