Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2414 369 7e-97 seq1321 136 7e-27 >seq2414 Length=19474 Score = 369 bits (408), Expect = 7e-97 Identities = 973/1462 (67%), Gaps = 59/1462 (4%) Strand=Plus/Minus Query 212688 AGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747 || || | ||| || ||||| |||||||| ||||| | | | | ||| ||||| | ||| Sbjct 3386 AGGTGGATGTTGAGCGACTGGCTCTGGTCGATGAACGCGCCACGGTCGGCGGCGAGGTCG 3327 Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807 |||| | |||| || | |||||| || |||||| |||| | |||| || || ||| Sbjct 3326 ATGACGGCCTTCTGCGAAATCTCCCAGACCGTCTTGTAGATGGCCTTGATCTCGTCCGGG 3267 Query 212808 AAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCC 212864 | | ||| |||||||| | || || | || ||| | || | | ||||| Sbjct 3266 ATGTTGGGAATGTTCTGGATCGAACCACGGTTGGCGATGATGAGGTTCTT---CATGTTG 3210 Query 212865 TCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGAC-CAGGTGA---GGGTTGACTATCTG 212920 |||| ||||| ||| | | |||| | || |||| | ||| ||| | ||| Sbjct 3209 TCGTCCCAGATGCCGAGGTTGATCAGG----TCACGCAGGAGCCATGGGCAGACAACCTG 3154 Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980 ||||||||| |||||||| | | ||| | | || ||||| ||||||| || ||| Sbjct 3153 GAAGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGCTCGAAGCACTC 3094 Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040 ||| || || ||||| | || || || |||||||| || || || || ||| Sbjct 3093 GTTCCAGCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTT 3034 Query 213041 CCTCACTCCGTGCTCGCCGATGAGGCGC-CGAAGCTCTGCCCAGTCCCATCTGCCAGACA 213099 | ||| |||||||||| ||| | ||| || || ||||||||||| | | | | Sbjct 3033 GCGCACACCGTGCTCGCTGATCTG-CGCACGGAGAGGGGCCCAGTCCCAGAGGTCGGT-A 2976 Query 213100 GGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGC 213159 || | || || ||| | ||| ||||| | |||| | | | ||| || Sbjct 2975 GGAGCACGGCC--------CCAGAGGTCGAACTGGAGCTTGCCCTGGGAGATGGGCGAGC 2924 Query 213160 CCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAG 213219 ||| ||| |||| ||| ||| |||||||||| ||||||| ||||| || ||||| | Sbjct 2923 CCTCGTACGAGGGGTACTTGCCGAGCTCCTTGGCAAGCTCGCTGGACGACTCGAGGGCGG 2864 Query 213220 CGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGG 213279 ||| ||||||||| || || |||| |||||||| ||||| || || ||||| Sbjct 2863 CGTGGTAGATGGTCTCGAAGATCTTGAGGTTGAGCTCACGAGCCTCAGGCGAGTCGAAGG 2804 Query 213280 GCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTG 213338 |||| | || || || || || || ||||| || |||| |||| ||| | | Sbjct 2803 GCATGCGGAGAGCCATG-AAGGTGTCGGCGAGACCCTGAACACCGAGACCGACGGGGCGG 2745 Query 213339 TGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC-AGTCGATGATCT 213396 || | || ||| || ||| |||| ||||| | |||||| |||||| ||| ||||| || Sbjct 2744 TGGCGCATGTTGGAGTTGCGAGC-CTCCTTGACGGGGTAGTAGTTGCGAGT-GATGACCT 2687 Query 213397 TGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTG-AACACG 213455 || |||||| |||| | || ||||||| | | ||| | || | | | || | Sbjct 2686 GGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCT 2627 Query 213456 TAGCCCCC--GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCA 213513 |||| | ||| ||||| | || || || || ||| |||||||| ||||| | Sbjct 2626 GAGCCTCAAAGTCG---ACAAAGGCGGGAAGAGCAATCGAGGCAAGGTTGCAGACGGCGA 2570 Query 213514 CCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGC 213573 |||| | || | |||||| |||||||| ||||| |||||| | |||||||| Sbjct 2569 CCTCGTCAGGCGACGAGTACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGC 2510 Query 213574 CCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACC 213633 | |||| ||| ||||| ||||| | |||||| | ||||||||||||||| |||| | Sbjct 2509 CGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGACCAC 2450 Query 213634 CGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCC 213693 | ||||| ||| | | | || || | ||| || | | ||||||| | | Sbjct 2449 CAGTCTCAGTCTGAGCCTCGAGGATAGCGAACCAAAGCTTCTGAGCCTTGATG----GTC 2394 Query 213694 TGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG 213752 | | | | | | | || |||||||| ||||| |||| | ||| || | || || Sbjct 2393 TTGCGACCCTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTGCTCGAACTCCT---CCGAG 2337 Query 213753 ---ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCT 213809 || | | || || || || ||||| ||||||||| ||||||| ||||| | Sbjct 2336 TGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCGCCGTCCGCC 2277 Query 213810 CTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTC 213869 ||| | || |||||| ||||| |||| ||| || ||| ||| ||||| | || | | Sbjct 2276 TCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGC 2217 Query 213870 CTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCAC 213929 |||| ||| || ||| ||||| || || || ||||| |||| ||| |||||||| Sbjct 2216 ATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAA 2157 Query 213930 GGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTG 213986 ||||| | ||||||||||||||| || | || | |||||||||||||| | | | Sbjct 2156 GGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGCCCTGGTCGA----CGTA 2101 Query 213987 GCCACCA-TG---TTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGT 214042 | | || || | | | || || | ||| || | |||||||| | |||||||| Sbjct 2100 ACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGT 2041 Query 214043 TCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGC 214102 || || || |||||||| ||| | | |||| ||| ||| || || || ||||| Sbjct 2040 ACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCAATACCGCCGGC 1981 Query 214103 GTACTTGGAGATCATGGCGCAG 214124 |||||||||| |||||| Sbjct 1980 AGTCTTGGAGATCTGAGCGCAG 1959 >seq1321 Length=24731 Score = 136 bits (150), Expect = 7e-27 Identities = 247/353 (70%), Gaps = 10/353 (3%) Strand=Plus/Minus Query 48001 GTTCATGCCTATGAGGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA 48059 ||| ||||| || |||| || ||| | || | ||| || ||||||||||| |||| | Sbjct 19326 GTTGATGCCGATCAGGGCGCATGGG-AGGGCGTCTGTCAGGAACTCCTTCTCGATCTCGA 19268 Query 48060 CGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG 48119 | || ||| || || | | || | || ||| || ||||||| || | Sbjct 19267 CTGCCTCCGAGACGATGCGATGCACCTCGCTCTGGGAGCACCGGTGCCGCAGGTACTGG- 19209 Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 || || | |||||| ||||| |||||| ||| ||||| || ||||||| |||||| Sbjct 19208 --TACAGGAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGG 19151 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239 ||||| ||| || |||| | || | || ||||||||||| || |||||||| |||| Sbjct 19150 AGAAGGTGAGGCCGCGCATCAGACCACGCTTCTTGAGCCAGAAGATGGCCGCGAATGAGC 19091 Query 48240 CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT 48299 | ||||||||||||||||| || ||| || ||| | || | | | || ||| || | Sbjct 19090 CCGAGAAGAAGATGCCCTCAACACACGCAAAGGCGATCAGACGC-GTGCGGAAG-GGCAT 19033 Query 48300 -TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||| | | | ||||||||||| ||||||||| |||||| || Sbjct 19032 ATCTGGTGTGATGTACTTG--AGCGCCCAGTCGGCCTTCTTCCGGATGCAGGG 18982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931488296020480