Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 369 7e-97
seq1321 136 7e-27
>seq2414
Length=19474
Score = 369 bits (408), Expect = 7e-97
Identities = 973/1462 (67%), Gaps = 59/1462 (4%)
Strand=Plus/Minus
Query 212688 AGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747
|| || | ||| || ||||| |||||||| ||||| | | | | ||| ||||| | |||
Sbjct 3386 AGGTGGATGTTGAGCGACTGGCTCTGGTCGATGAACGCGCCACGGTCGGCGGCGAGGTCG 3327
Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807
|||| | |||| || | |||||| || |||||| |||| | |||| || || |||
Sbjct 3326 ATGACGGCCTTCTGCGAAATCTCCCAGACCGTCTTGTAGATGGCCTTGATCTCGTCCGGG 3267
Query 212808 AAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCC 212864
| | ||| |||||||| | || || | || ||| | || | | |||||
Sbjct 3266 ATGTTGGGAATGTTCTGGATCGAACCACGGTTGGCGATGATGAGGTTCTT---CATGTTG 3210
Query 212865 TCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGAC-CAGGTGA---GGGTTGACTATCTG 212920
|||| ||||| ||| | | |||| | || |||| | ||| ||| | |||
Sbjct 3209 TCGTCCCAGATGCCGAGGTTGATCAGG----TCACGCAGGAGCCATGGGCAGACAACCTG 3154
Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980
||||||||| |||||||| | | ||| | | || ||||| ||||||| || |||
Sbjct 3153 GAAGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGCTCGAAGCACTC 3094
Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040
||| || || ||||| | || || || |||||||| || || || || |||
Sbjct 3093 GTTCCAGCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTT 3034
Query 213041 CCTCACTCCGTGCTCGCCGATGAGGCGC-CGAAGCTCTGCCCAGTCCCATCTGCCAGACA 213099
| ||| |||||||||| ||| | ||| || || ||||||||||| | | | |
Sbjct 3033 GCGCACACCGTGCTCGCTGATCTG-CGCACGGAGAGGGGCCCAGTCCCAGAGGTCGGT-A 2976
Query 213100 GGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGC 213159
|| | || || ||| | ||| ||||| | |||| | | | ||| ||
Sbjct 2975 GGAGCACGGCC--------CCAGAGGTCGAACTGGAGCTTGCCCTGGGAGATGGGCGAGC 2924
Query 213160 CCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAG 213219
||| ||| |||| ||| ||| |||||||||| ||||||| ||||| || ||||| |
Sbjct 2923 CCTCGTACGAGGGGTACTTGCCGAGCTCCTTGGCAAGCTCGCTGGACGACTCGAGGGCGG 2864
Query 213220 CGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGG 213279
||| ||||||||| || || |||| |||||||| ||||| || || |||||
Sbjct 2863 CGTGGTAGATGGTCTCGAAGATCTTGAGGTTGAGCTCACGAGCCTCAGGCGAGTCGAAGG 2804
Query 213280 GCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTG 213338
|||| | || || || || || || ||||| || |||| |||| ||| | |
Sbjct 2803 GCATGCGGAGAGCCATG-AAGGTGTCGGCGAGACCCTGAACACCGAGACCGACGGGGCGG 2745
Query 213339 TGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC-AGTCGATGATCT 213396
|| | || ||| || ||| |||| ||||| | |||||| |||||| ||| ||||| ||
Sbjct 2744 TGGCGCATGTTGGAGTTGCGAGC-CTCCTTGACGGGGTAGTAGTTGCGAGT-GATGACCT 2687
Query 213397 TGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTG-AACACG 213455
|| |||||| |||| | || ||||||| | | ||| | || | | | || |
Sbjct 2686 GGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCT 2627
Query 213456 TAGCCCCC--GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCA 213513
|||| | ||| ||||| | || || || || ||| |||||||| ||||| |
Sbjct 2626 GAGCCTCAAAGTCG---ACAAAGGCGGGAAGAGCAATCGAGGCAAGGTTGCAGACGGCGA 2570
Query 213514 CCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGC 213573
|||| | || | |||||| |||||||| ||||| |||||| | ||||||||
Sbjct 2569 CCTCGTCAGGCGACGAGTACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGC 2510
Query 213574 CCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACC 213633
| |||| ||| ||||| ||||| | |||||| | ||||||||||||||| |||| |
Sbjct 2509 CGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGACCAC 2450
Query 213634 CGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCC 213693
| ||||| ||| | | | || || | ||| || | | ||||||| | |
Sbjct 2449 CAGTCTCAGTCTGAGCCTCGAGGATAGCGAACCAAAGCTTCTGAGCCTTGATG----GTC 2394
Query 213694 TGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG 213752
| | | | | | | || |||||||| ||||| |||| | ||| || | || ||
Sbjct 2393 TTGCGACCCTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTGCTCGAACTCCT---CCGAG 2337
Query 213753 ---ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCT 213809
|| | | || || || || ||||| ||||||||| ||||||| ||||| |
Sbjct 2336 TGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCGCCGTCCGCC 2277
Query 213810 CTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTC 213869
||| | || |||||| ||||| |||| ||| || ||| ||| ||||| | || | |
Sbjct 2276 TCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGC 2217
Query 213870 CTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCAC 213929
|||| ||| || ||| ||||| || || || ||||| |||| ||| ||||||||
Sbjct 2216 ATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAA 2157
Query 213930 GGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTG 213986
||||| | ||||||||||||||| || | || | |||||||||||||| | | |
Sbjct 2156 GGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGCCCTGGTCGA----CGTA 2101
Query 213987 GCCACCA-TG---TTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGT 214042
| | || || | | | || || | ||| || | |||||||| | ||||||||
Sbjct 2100 ACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGT 2041
Query 214043 TCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGC 214102
|| || || |||||||| ||| | | |||| ||| ||| || || || |||||
Sbjct 2040 ACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCAATACCGCCGGC 1981
Query 214103 GTACTTGGAGATCATGGCGCAG 214124
|||||||||| ||||||
Sbjct 1980 AGTCTTGGAGATCTGAGCGCAG 1959
>seq1321
Length=24731
Score = 136 bits (150), Expect = 7e-27
Identities = 247/353 (70%), Gaps = 10/353 (3%)
Strand=Plus/Minus
Query 48001 GTTCATGCCTATGAGGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA 48059
||| ||||| || |||| || ||| | || | ||| || ||||||||||| |||| |
Sbjct 19326 GTTGATGCCGATCAGGGCGCATGGG-AGGGCGTCTGTCAGGAACTCCTTCTCGATCTCGA 19268
Query 48060 CGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG 48119
| || ||| || || | | || | || ||| || ||||||| || |
Sbjct 19267 CTGCCTCCGAGACGATGCGATGCACCTCGCTCTGGGAGCACCGGTGCCGCAGGTACTGG- 19209
Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179
|| || | |||||| ||||| |||||| ||| ||||| || ||||||| ||||||
Sbjct 19208 --TACAGGAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGG 19151
Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239
||||| ||| || |||| | || | || ||||||||||| || |||||||| ||||
Sbjct 19150 AGAAGGTGAGGCCGCGCATCAGACCACGCTTCTTGAGCCAGAAGATGGCCGCGAATGAGC 19091
Query 48240 CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT 48299
| ||||||||||||||||| || ||| || ||| | || | | | || ||| || |
Sbjct 19090 CCGAGAAGAAGATGCCCTCAACACACGCAAAGGCGATCAGACGC-GTGCGGAAG-GGCAT 19033
Query 48300 -TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||| || ||| | | | ||||||||||| ||||||||| |||||| ||
Sbjct 19032 ATCTGGTGTGATGTACTTG--AGCGCCCAGTCGGCCTTCTTCCGGATGCAGGG 18982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931488296020480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |