Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2414 304 2e-77 seq1321 105 1e-17 >seq2414 Length=19474 Score = 304 bits (336), Expect = 2e-77 Identities = 813/1221 (67%), Gaps = 39/1221 (3%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| ||||||||||||||||| |||||| | |||||| ||| | ||||| || || Sbjct 2870 AGGGCGGCGTGGTAGATGGTCTCGAAGATCTTGAGGTTGAG-CTCACGAGCCTCAGGCGA 2812 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||||||| || || | ||| |||||| || ||||| || |||| ||||| Sbjct 2811 GTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCGAGACCCTGAACACCGAGACCGAC 2752 Query 221539 GGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 ||| | ||| | | ||||||| ||| | || || | ||||| || ||||| | Sbjct 2751 GGGGCGGTGGCGCATGTTGGAGTTGCGAGC-CTCCTTG-ACGGGGTAGTAGTTGCGAGTG 2694 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | | || ||||||| |||| ||| || | |||| |||||||| || Sbjct 2693 ATGACCTGGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGCAGCTTCT------TG 2640 Query 221657 AACACC-AACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 || | || || ||| | | | || ||||| ||| || |||| ||| Sbjct 2639 AAGTCGTAAGTCTGAGCC----TCAAAG---TCGACAAAGGCGGGAAGAGCAATCGAGGC 2587 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 ||||| || ||||| |||||||| | |||| |||||||| || |||||||| Sbjct 2586 AAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATCTCAGTGCAGAGGTT 2527 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | |||||||||| || ||||| | || || |||||| ||||| ||||||||||| Sbjct 2526 GGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTA 2467 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 |||||| |||||||| |||||||| ||||||| | || || | ||| || | ||| Sbjct 2466 GAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAACCAAAGCT-TCT 2408 Query 221896 G-GCGCTCACCGTCCTCTTGAC---TGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | || | | ||| | ||| ||| ||||| ||| | | | || || ||| Sbjct 2407 GAGCCTTGATGGTCTTGC-GACCCTTGC--CCTCGCTCTCGTACTTCTCG---TAAAGCT 2354 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 || |||| || || | ||| | ||||| || ||| |||||| ||||| || Sbjct 2353 GCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCACATGAGGG 2294 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||||| || | | ||| | || |||||||||||| |||||||| || || | | Sbjct 2293 TCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGA 2234 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||| || | || ||| ||||||| ||||| ||| || | || || | || || | Sbjct 2233 AGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGA 2174 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | ||| |||||||| ||||| || |||| ||| | || ||||| ||||||||||| | Sbjct 2173 AGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGC 2114 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||| || || | | || | | | || || | || || | ||||||| Sbjct 2113 CCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTTGG 2054 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATG 222310 | ||||||||| || |||||||| || ||| | | ||| ||| | | Sbjct 2053 AGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTT-GTGGATGTGGAGA 1995 Query 222311 CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCC 222370 || ||||| ||||| || |||||| |||||| ||||||| ||||| |||||| Sbjct 1994 CCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCCA 1935 Query 222371 TCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAA 222430 || || ||||| ||||| | | | || || ||||| |||||||||| | | | | Sbjct 1934 TCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGTA 1875 Query 222431 CAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTAC 222490 | ||||| || || || || ||||| || ||||||| | ||||| || | || Sbjct 1874 CCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTATAG 1815 Query 222491 GTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATCTCATGTACAT 222549 ||||| | ||| | | |||||||||| ||||| || | | | | || | ||| ||| Sbjct 1814 GTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACGGACACA-CGCATAAGCAT 1756 Query 222550 GTACTGGGGCCTCTCCACAGGACCCTTGGA--GCTGGAGAGCAGGTACGATTTTTCCAGA 222607 || ||| || | ||| | |||| | | | || ||| ||||| || || ||| Sbjct 1755 GTGCTGCGGGCGCTCGGC--GACCTTGCCACCGATGCGGAGGAGGTAGGAACGCTCGAGA 1698 Query 222608 GTCTTGAACCCAAAGTAGTTG 222628 |||||||| || ||| ||||| Sbjct 1697 GTCTTGAAGCCGAAGAAGTTG 1677 >seq1321 Length=24731 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 25878 GCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCAT 25937 ||| ||| | |||||||| ||| ||||||||||| ||| || || || |||||||| Sbjct 19047 GCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCAT 19106 Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 ||||||||||||| || || |||| ||| || ||| ||||||||||||||| Sbjct 19107 CTTCTGGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTC 19166 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | |||||||| | |||| || || |||||||| || ||| Sbjct 19167 GCGCGACGAGGGCATGCACACCGACTTCGCCTGCCTCCTGTAC 19209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928800424439680