Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 304 2e-77
seq1321 105 1e-17
>seq2414
Length=19474
Score = 304 bits (336), Expect = 2e-77
Identities = 813/1221 (67%), Gaps = 39/1221 (3%)
Strand=Plus/Minus
Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478
||||| ||||||||||||||||| |||||| | |||||| ||| | ||||| || ||
Sbjct 2870 AGGGCGGCGTGGTAGATGGTCTCGAAGATCTTGAGGTTGAG-CTCACGAGCCTCAGGCGA 2812
Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538
||||||||| || || | ||| |||||| || ||||| || |||| |||||
Sbjct 2811 GTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCGAGACCCTGAACACCGAGACCGAC 2752
Query 221539 GGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596
||| | ||| | | ||||||| ||| | || || | ||||| || ||||| |
Sbjct 2751 GGGGCGGTGGCGCATGTTGGAGTTGCGAGC-CTCCTTG-ACGGGGTAGTAGTTGCGAGTG 2694
Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656
|| | | || ||||||| |||| ||| || | |||| |||||||| ||
Sbjct 2693 ATGACCTGGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGCAGCTTCT------TG 2640
Query 221657 AACACC-AACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715
|| | || || ||| | | | || ||||| ||| || |||| |||
Sbjct 2639 AAGTCGTAAGTCTGAGCC----TCAAAG---TCGACAAAGGCGGGAAGAGCAATCGAGGC 2587
Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775
||||| || ||||| |||||||| | |||| |||||||| || ||||||||
Sbjct 2586 AAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATCTCAGTGCAGAGGTT 2527
Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835
| |||||||||| || ||||| | || || |||||| ||||| |||||||||||
Sbjct 2526 GGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTA 2467
Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895
|||||| |||||||| |||||||| ||||||| | || || | ||| || | |||
Sbjct 2466 GAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAACCAAAGCT-TCT 2408
Query 221896 G-GCGCTCACCGTCCTCTTGAC---TGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951
| || | | ||| | ||| ||| ||||| ||| | | | || || |||
Sbjct 2407 GAGCCTTGATGGTCTTGC-GACCCTTGC--CCTCGCTCTCGTACTTCTCG---TAAAGCT 2354
Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011
|| |||| || || | ||| | ||||| || ||| |||||| ||||| ||
Sbjct 2353 GCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCACATGAGGG 2294
Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071
|||||| || | | ||| | || |||||||||||| |||||||| || || | |
Sbjct 2293 TCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGA 2234
Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131
|||| || | || ||| ||||||| ||||| ||| || | || || | || || |
Sbjct 2233 AGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGA 2174
Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191
| | ||| |||||||| ||||| || |||| ||| | || ||||| ||||||||||| |
Sbjct 2173 AGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGC 2114
Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
|||| || || | | || | | | || || | || || | |||||||
Sbjct 2113 CCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTTGG 2054
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATG 222310
| ||||||||| || |||||||| || ||| | | ||| ||| | |
Sbjct 2053 AGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTT-GTGGATGTGGAGA 1995
Query 222311 CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCC 222370
|| ||||| ||||| || |||||| |||||| ||||||| ||||| ||||||
Sbjct 1994 CCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCCA 1935
Query 222371 TCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAA 222430
|| || ||||| ||||| | | | || || ||||| |||||||||| | | | |
Sbjct 1934 TCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGTA 1875
Query 222431 CAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTAC 222490
| ||||| || || || || ||||| || ||||||| | ||||| || | ||
Sbjct 1874 CCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTATAG 1815
Query 222491 GTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATCTCATGTACAT 222549
||||| | ||| | | |||||||||| ||||| || | | | | || | ||| |||
Sbjct 1814 GTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACGGACACA-CGCATAAGCAT 1756
Query 222550 GTACTGGGGCCTCTCCACAGGACCCTTGGA--GCTGGAGAGCAGGTACGATTTTTCCAGA 222607
|| ||| || | ||| | |||| | | | || ||| ||||| || || |||
Sbjct 1755 GTGCTGCGGGCGCTCGGC--GACCTTGCCACCGATGCGGAGGAGGTAGGAACGCTCGAGA 1698
Query 222608 GTCTTGAACCCAAAGTAGTTG 222628
|||||||| || ||| |||||
Sbjct 1697 GTCTTGAAGCCGAAGAAGTTG 1677
>seq1321
Length=24731
Score = 105 bits (116), Expect = 1e-17
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 25878 GCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCAT 25937
||| ||| | |||||||| ||| ||||||||||| ||| || || || ||||||||
Sbjct 19047 GCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCAT 19106
Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997
||||||||||||| || || |||| ||| || ||| |||||||||||||||
Sbjct 19107 CTTCTGGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTC 19166
Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
| |||||||| | |||| || || |||||||| || |||
Sbjct 19167 GCGCGACGAGGGCATGCACACCGACTTCGCCTGCCTCCTGTAC 19209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928800424439680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |