Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 158 1e-33
seq400 93.3 5e-14
seq1321 89.7 6e-13
>seq2414
Length=19474
Score = 158 bits (174), Expect = 1e-33
Identities = 671/1048 (64%), Gaps = 29/1048 (3%)
Strand=Plus/Plus
Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270
||| ||| ||||| | ||||| || | |||| |||||||| || |||| || |||
Sbjct 1746 CCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGACCGTGT 1805
Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330
| | ||||| || || ||||| | | |||| ||||| | || ||||||||
Sbjct 1806 CATCGAGACCTATAACCTCATGTCGGAGCGCTACTTCACCCACGCTTCGCCTACCCTCTT 1865
Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390
||| |||||||| || | |||||||| |||||||||| |||||| ||||| ||
Sbjct 1866 CAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACGA 1925
Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450
||| || | || ||||| | || || | | || || || ||||| ||| || ||
Sbjct 1926 CTCGATTGATGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGG 1985
Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACA 75508
|||||||| | |||||||| | | | |||| | ||||| ||| || ||
Sbjct 1986 CGGTATTGGTCTCCACATCCACAACATCCGTGCCA--AGGGCTCGTACATTGCCGGTACC 2043
Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568
|| ||| | || | ||||| |||| ||||| || | | | ||||| || || ||
Sbjct 2044 AACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTAC 2103
Query 75569 GTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTACTTGGAACCATG 75621
| || | | ||||| | |||| || || | || ||||| | || || ||
Sbjct 2104 G----TCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTG 2159
Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681
||| ||||| || | || ||||| || | || ||||| || | || ||| ||
Sbjct 2160 GCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCG 2219
Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741
| || ||||| | |||| ||||| || ||||| ||||||||||| || ||||
Sbjct 2220 TGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGC 2279
Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTG 75799
|| || | ||| | || | || || | | || || || || |||||| | |
Sbjct 2280 GGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACTC 2339
Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAG-GAGGGTA---GAGCCAATGC 75855
| |||||||| || || ||| ||||| | |||| ||||| | | |||
Sbjct 2340 G--GAGGAGTTCGAGCAGCTTTACGAGAAGTACG-AGAGCGAGGGCAAGGGTCGCAA--- 2393
Query 75856 GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914
||| | | || | | || | ||||| ||||| ||| | | ||||| ||||||||
Sbjct 2394 GACCAT-CAAGGCTCAGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTG 2452
Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974
|| | ||||| |||||||| || ||| ||| ||||| || | | || |
Sbjct 2453 GTCCCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCA 2512
Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034
| |||||| || || || ||||| || || | |||||| | || ||| |
Sbjct 2513 CCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTGACGAGGTCG 2572
Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094
| || ||||| | || || || || ||||| | |||| | ||| ||| ||||
Sbjct 2573 CCGTCTGCAACCTTGCCTCGATTGCTCTTCCCGCCTTTGTCGACTTTGAGGCTCAGACTT 2632
Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154
|| | | || || || || ||||| ||| | || ||||| || || ||| ||||
Sbjct 2633 ACGACTTCAAGAAGCTGCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCA 2692
Query 76155 TTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214
| | || | || ||||| || || || || || || ||||| ||| | ||
Sbjct 2693 TCACTCGCAACTACTACCCCGTCAAGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCG 2752
Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242
| ||| | |||||||| |||||||| ||
Sbjct 2753 TCGGTCTCGGTGTTCAGGGTCTCGCCGA 2780
>seq400
Length=29784
Score = 93.3 bits (102), Expect = 5e-14
Identities = 186/270 (69%), Gaps = 8/270 (3%)
Strand=Plus/Minus
Query 175182 CCGCTTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGA 175241
||||||| | || || | || || |||| ||||| || || || ||| |||| |
Sbjct 15822 CCGCTTCCGCGACGTAGCTGGCATGGACGAGGCCAAGGAGGAGATTATGGAGTTTGTCAA 15763
Query 175242 TTTTCTCAAGCAACCCGAGAGATATTTTG-GAAG--TGGTGCCAAGATCCCCCGAGGCGC 175298
|| |||||| | || || | | | |||| |||||||||||| || || |||||
Sbjct 15762 GTTCCTCAAGGAGCC---GACCAAGTACGAGAAGCTTGGTGCCAAGATTCCTCGCGGCGC 15706
Query 175299 CCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGA 175358
| | || ||||| || ||||| || ||||||||||| ||| |||| || |||||
Sbjct 15705 CATCCTTTCGGGTCCTCCCGGTACTGGTAAGACCCTCCTTGCCAAGGCCACGGCCGGTGA 15646
Query 175359 ATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTG 175417
| || ||||| ||| || | || ||| | | | || || ||||||||||| ||||
Sbjct 15645 GGCCAAGGTCCCCTTCTTCTCCGT-CTCCGGTTCCGAGTTCGTCGAGATGTTTGTCGGTG 15587
Query 175418 TGGGTGCCAAAAGGGTTCGCGATCTCTTTG 175447
| ||| || | || || ||||||||||
Sbjct 15586 TCGGTCCCTCGCGTGTGCGTGATCTCTTTG 15557
>seq1321
Length=24731
Score = 89.7 bits (98), Expect = 6e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTG 65148
|| ||||||||||| ||||| ||||||||||| || |||||| || || | ||| |
Sbjct 19057 GCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATCTTCTGGCTC 19116
Query 65149 AAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAG 65208
|||||||| ||||| |||| ||||| |||||| || || || || || || || |||
Sbjct 19117 AAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 19176
Query 65209 GG 65210
||
Sbjct 19177 GG 19178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596541098887360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |