Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2414 158 1e-33 seq400 93.3 5e-14 seq1321 89.7 6e-13 >seq2414 Length=19474 Score = 158 bits (174), Expect = 1e-33 Identities = 671/1048 (64%), Gaps = 29/1048 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| | ||||| || | |||| |||||||| || |||| || ||| Sbjct 1746 CCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGACCGTGT 1805 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| || || ||||| | | |||| ||||| | || |||||||| Sbjct 1806 CATCGAGACCTATAACCTCATGTCGGAGCGCTACTTCACCCACGCTTCGCCTACCCTCTT 1865 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| |||||||| || | |||||||| |||||||||| |||||| ||||| || Sbjct 1866 CAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACGA 1925 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || ||||| | || || | | || || || ||||| ||| || || Sbjct 1926 CTCGATTGATGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGG 1985 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACA 75508 |||||||| | |||||||| | | | |||| | ||||| ||| || || Sbjct 1986 CGGTATTGGTCTCCACATCCACAACATCCGTGCCA--AGGGCTCGTACATTGCCGGTACC 2043 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| | || | ||||| |||| ||||| || | | | ||||| || || || Sbjct 2044 AACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTAC 2103 Query 75569 GTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTACTTGGAACCATG 75621 | || | | ||||| | |||| || || | || ||||| | || || || Sbjct 2104 G----TCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTG 2159 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| ||||| || | || ||||| || | || ||||| || | || ||| || Sbjct 2160 GCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCG 2219 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | || ||||| | |||| ||||| || ||||| ||||||||||| || |||| Sbjct 2220 TGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGC 2279 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTG 75799 || || | ||| | || | || || | | || || || || |||||| | | Sbjct 2280 GGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACTC 2339 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAG-GAGGGTA---GAGCCAATGC 75855 | |||||||| || || ||| ||||| | |||| ||||| | | ||| Sbjct 2340 G--GAGGAGTTCGAGCAGCTTTACGAGAAGTACG-AGAGCGAGGGCAAGGGTCGCAA--- 2393 Query 75856 GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 ||| | | || | | || | ||||| ||||| ||| | | ||||| |||||||| Sbjct 2394 GACCAT-CAAGGCTCAGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTG 2452 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 || | ||||| |||||||| || ||| ||| ||||| || | | || | Sbjct 2453 GTCCCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCA 2512 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | |||||| || || || ||||| || || | |||||| | || ||| | Sbjct 2513 CCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTGACGAGGTCG 2572 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094 | || ||||| | || || || || ||||| | |||| | ||| ||| |||| Sbjct 2573 CCGTCTGCAACCTTGCCTCGATTGCTCTTCCCGCCTTTGTCGACTTTGAGGCTCAGACTT 2632 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 || | | || || || || ||||| ||| | || ||||| || || ||| |||| Sbjct 2633 ACGACTTCAAGAAGCTGCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCA 2692 Query 76155 TTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 | | || | || ||||| || || || || || || ||||| ||| | || Sbjct 2693 TCACTCGCAACTACTACCCCGTCAAGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCG 2752 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 | ||| | |||||||| |||||||| || Sbjct 2753 TCGGTCTCGGTGTTCAGGGTCTCGCCGA 2780 >seq400 Length=29784 Score = 93.3 bits (102), Expect = 5e-14 Identities = 186/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 175182 CCGCTTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGA 175241 ||||||| | || || | || || |||| ||||| || || || ||| |||| | Sbjct 15822 CCGCTTCCGCGACGTAGCTGGCATGGACGAGGCCAAGGAGGAGATTATGGAGTTTGTCAA 15763 Query 175242 TTTTCTCAAGCAACCCGAGAGATATTTTG-GAAG--TGGTGCCAAGATCCCCCGAGGCGC 175298 || |||||| | || || | | | |||| |||||||||||| || || ||||| Sbjct 15762 GTTCCTCAAGGAGCC---GACCAAGTACGAGAAGCTTGGTGCCAAGATTCCTCGCGGCGC 15706 Query 175299 CCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGA 175358 | | || ||||| || ||||| || ||||||||||| ||| |||| || ||||| Sbjct 15705 CATCCTTTCGGGTCCTCCCGGTACTGGTAAGACCCTCCTTGCCAAGGCCACGGCCGGTGA 15646 Query 175359 ATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTG 175417 | || ||||| ||| || | || ||| | | | || || ||||||||||| |||| Sbjct 15645 GGCCAAGGTCCCCTTCTTCTCCGT-CTCCGGTTCCGAGTTCGTCGAGATGTTTGTCGGTG 15587 Query 175418 TGGGTGCCAAAAGGGTTCGCGATCTCTTTG 175447 | ||| || | || || |||||||||| Sbjct 15586 TCGGTCCCTCGCGTGTGCGTGATCTCTTTG 15557 >seq1321 Length=24731 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTG 65148 || ||||||||||| ||||| ||||||||||| || |||||| || || | ||| | Sbjct 19057 GCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATCTTCTGGCTC 19116 Query 65149 AAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAG 65208 |||||||| ||||| |||| ||||| |||||| || || || || || || || ||| Sbjct 19117 AAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 19176 Query 65209 GG 65210 || Sbjct 19177 GG 19178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596541098887360