Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2686 190 3e-43 seq180 149 8e-31 seq400 105 9e-18 seq2414 100 4e-16 >seq2686 Length=8065 Score = 190 bits (210), Expect = 3e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||||||||| |||||||| Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||| || || ||||| ||||| || ||||| ||| Sbjct 6729 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6670 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || ||||| || || || || ||||| | || |||||| Sbjct 6669 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 6610 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| ||||| | ||||| |||||| Sbjct 6609 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGCCTTCGTGGTGGT 6562 >seq180 Length=11059 Score = 149 bits (164), Expect = 8e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || || || || ||||| |||||||| |||||||| ||||| ||||| ||| |||| Sbjct 10931 CCTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAA 10872 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 | ||||| || || ||||| || ||||| ||||| ||||| || || || || || || Sbjct 10871 GTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGG 10812 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 || ||||| || || || || || || | || |||||| | || ||||||||||| || Sbjct 10811 AAAGCAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTACGCT 10752 Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| || || | ||||| ||||| Sbjct 10751 CCACCTGGTCCTCCGTCTTCGTGGTGG 10725 >seq400 Length=29784 Score = 105 bits (116), Expect = 9e-18 Identities = 262/387 (68%), Gaps = 17/387 (4%) Strand=Plus/Minus Query 198477 GCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGA 198536 || ||||| ||| | |||| |||| | || || || | || |||||| | || Sbjct 15791 GCCAAGGAGGAGATTATGGAGTTTGTCAAGTTCCTCAAGGAGCCGACCAAGTACGA--GA 15734 Query 198537 AG--TGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAA 198594 || ||||||| || || || || || | || | ||| | || ||||||||||| | Sbjct 15733 AGCTTGGTGCCAAGATTCCTCGCGGCGCCATCCTTTCGGGTCCTCCCGGTACTGGTAAGA 15674 Query 198595 CCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCT-TCAGTGCTCCGCG 198653 |||| || || || | || ||||| | | |||||||| | || || ||||| Sbjct 15673 CCCTCCTTGCCAAGGCCACGGCCGGTGAGGCCAAGGTCCCCTTCTTCTCCGT-CTCCGGT 15615 Query 198654 GC-GAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGA 198712 | ||||| | |||||||||| || ||||| ||| | ||| || || || ||||||| Sbjct 15614 TCCGAGTT-CGTCGAGATGTTTGTCGGTGTCGGTCCCTCGCGTGTGCGTGATCTCTTTGC 15556 Query 198713 GCAAGCACGTGAAAATCAACCATGT-ATCATCTTCATTGATGAGATTGACGCTGTTGGTA 198771 ||| || | ||| | | || || ||| ||||||| || ||||| ||||| | |||| Sbjct 15555 GCAGGCTAG-GAAGAACGCCCCTGCCATCGTCTTCATCGACGAGATCGACGCCATCGGTA 15497 Query 198772 AGAAGCGTGGTGGAACTACTACACCT-----GGTAATGATGAGCGTGAGCAGACGATTAA 198826 || |||||| || | || || || || || ||||| ||| |||| | || Sbjct 15496 AGGCGCGTGGC--AAGGGCGGCAACTTTGGCGGCAACGACGAGCGCGAGTCGACGTTGAA 15439 Query 198827 CCAGCTTCTCACTGAGATGGATGGTTT 198853 |||||||||| |||||||| ||||| Sbjct 15438 CCAGCTTCTCGTCGAGATGGACGGTTT 15412 >seq2414 Length=19474 Score = 100 bits (110), Expect = 4e-16 Identities = 222/330 (67%), Gaps = 11/330 (3%) Strand=Plus/Plus Query 78050 CACGCAACACCTACTTTGTTTAATGCAGGTACTCCCCGTCCACAGATGTCATCTTGTTTC 78109 ||||| | ||||| | || || || |||||||| | | |||||||||||||| ||| Sbjct 1846 CACGCTTCGCCTACCCTCTTCAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTC 1905 Query 78110 CTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGA-GTGTGC 78168 || | || | ||||| ||||| ||| |||| || |||| || |||| ||| || || Sbjct 1906 CTTGTCGCCATGAAGGACGACTCGATTGATGGCATCTACGACACCCTCA-AGACCTGCGC 1964 Query 78169 TCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACAA 78228 |||||| || ||| || || ||||| ||||| || || ||| | | ||||| || Sbjct 1965 TCAGATCTCCAAGACTGCCGGCGGTATTGGTCTCCACATCCACAACATCCGTGCCAAGGG 2024 Query 78229 GTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATT 78288 || ||| || || || ||| | || | || || |||| ||||| | | | Sbjct 2025 CTCGTACATTGCCGGTACCAACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTA 2084 Query 78289 CAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAG------GGGTCATTCGC 78342 | |||| || || || || ||| |||| ||| | | ||| || | || || Sbjct 2085 CGATGCCACTGCTCGTTACGTCGACCA---GGGCGGCAACAAGCGCCCCGGTGCCTTTGC 2141 Query 78343 TATGTACCTTGAACCTTGGCACGCCGATGT 78372 || ||||| || |||||||||||||| || Sbjct 2142 CATCTACCTCGAGCCTTGGCACGCCGACGT 2171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657830970623840