Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 190 3e-43
seq180 149 8e-31
seq400 105 9e-18
seq2414 100 4e-16
>seq2686
Length=8065
Score = 190 bits (210), Expect = 3e-43
Identities = 179/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || ||||||||||||||||| ||||||||
Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| |||| ||||||| || || ||||| ||||| || ||||| |||
Sbjct 6729 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6670
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || ||||| || ||||| || || || || ||||| | || ||||||
Sbjct 6669 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 6610
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| || |||||||| || || ||||| ||||| | ||||| ||||||
Sbjct 6609 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGCCTTCGTGGTGGT 6562
>seq180
Length=11059
Score = 149 bits (164), Expect = 8e-31
Identities = 157/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941
||| || || || || ||||| |||||||| |||||||| ||||| ||||| ||| ||||
Sbjct 10931 CCTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAA 10872
Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001
| ||||| || || ||||| || ||||| ||||| ||||| || || || || || ||
Sbjct 10871 GTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGG 10812
Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061
|| ||||| || || || || || || | || |||||| | || ||||||||||| ||
Sbjct 10811 AAAGCAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTACGCT 10752
Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGG 172088
||||| || || | ||||| |||||
Sbjct 10751 CCACCTGGTCCTCCGTCTTCGTGGTGG 10725
>seq400
Length=29784
Score = 105 bits (116), Expect = 9e-18
Identities = 262/387 (68%), Gaps = 17/387 (4%)
Strand=Plus/Minus
Query 198477 GCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGA 198536
|| ||||| ||| | |||| |||| | || || || | || |||||| | ||
Sbjct 15791 GCCAAGGAGGAGATTATGGAGTTTGTCAAGTTCCTCAAGGAGCCGACCAAGTACGA--GA 15734
Query 198537 AG--TGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAA 198594
|| ||||||| || || || || || | || | ||| | || ||||||||||| |
Sbjct 15733 AGCTTGGTGCCAAGATTCCTCGCGGCGCCATCCTTTCGGGTCCTCCCGGTACTGGTAAGA 15674
Query 198595 CCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCT-TCAGTGCTCCGCG 198653
|||| || || || | || ||||| | | |||||||| | || || |||||
Sbjct 15673 CCCTCCTTGCCAAGGCCACGGCCGGTGAGGCCAAGGTCCCCTTCTTCTCCGT-CTCCGGT 15615
Query 198654 GC-GAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGA 198712
| ||||| | |||||||||| || ||||| ||| | ||| || || || |||||||
Sbjct 15614 TCCGAGTT-CGTCGAGATGTTTGTCGGTGTCGGTCCCTCGCGTGTGCGTGATCTCTTTGC 15556
Query 198713 GCAAGCACGTGAAAATCAACCATGT-ATCATCTTCATTGATGAGATTGACGCTGTTGGTA 198771
||| || | ||| | | || || ||| ||||||| || ||||| ||||| | ||||
Sbjct 15555 GCAGGCTAG-GAAGAACGCCCCTGCCATCGTCTTCATCGACGAGATCGACGCCATCGGTA 15497
Query 198772 AGAAGCGTGGTGGAACTACTACACCT-----GGTAATGATGAGCGTGAGCAGACGATTAA 198826
|| |||||| || | || || || || || ||||| ||| |||| | ||
Sbjct 15496 AGGCGCGTGGC--AAGGGCGGCAACTTTGGCGGCAACGACGAGCGCGAGTCGACGTTGAA 15439
Query 198827 CCAGCTTCTCACTGAGATGGATGGTTT 198853
|||||||||| |||||||| |||||
Sbjct 15438 CCAGCTTCTCGTCGAGATGGACGGTTT 15412
>seq2414
Length=19474
Score = 100 bits (110), Expect = 4e-16
Identities = 222/330 (67%), Gaps = 11/330 (3%)
Strand=Plus/Plus
Query 78050 CACGCAACACCTACTTTGTTTAATGCAGGTACTCCCCGTCCACAGATGTCATCTTGTTTC 78109
||||| | ||||| | || || || |||||||| | | |||||||||||||| |||
Sbjct 1846 CACGCTTCGCCTACCCTCTTCAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTC 1905
Query 78110 CTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGA-GTGTGC 78168
|| | || | ||||| ||||| ||| |||| || |||| || |||| ||| || ||
Sbjct 1906 CTTGTCGCCATGAAGGACGACTCGATTGATGGCATCTACGACACCCTCA-AGACCTGCGC 1964
Query 78169 TCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACAA 78228
|||||| || ||| || || ||||| ||||| || || ||| | | ||||| ||
Sbjct 1965 TCAGATCTCCAAGACTGCCGGCGGTATTGGTCTCCACATCCACAACATCCGTGCCAAGGG 2024
Query 78229 GTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATT 78288
|| ||| || || || ||| | || | || || |||| ||||| | | |
Sbjct 2025 CTCGTACATTGCCGGTACCAACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTA 2084
Query 78289 CAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAG------GGGTCATTCGC 78342
| |||| || || || || ||| |||| ||| | | ||| || | || ||
Sbjct 2085 CGATGCCACTGCTCGTTACGTCGACCA---GGGCGGCAACAAGCGCCCCGGTGCCTTTGC 2141
Query 78343 TATGTACCTTGAACCTTGGCACGCCGATGT 78372
|| ||||| || |||||||||||||| ||
Sbjct 2142 CATCTACCTCGAGCCTTGGCACGCCGACGT 2171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657830970623840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |