Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq252 89.7 2e-12 seq1572 84.2 6e-11 >seq252 Length=28045 Score = 89.7 bits (98), Expect = 2e-12 Identities = 237/360 (66%), Gaps = 4/360 (1%) Strand=Plus/Plus Query 59988 AACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAAT 60047 |||| ||||||||||| | | || ||||| ||||||||||| | | | || | || | Sbjct 5771 AACCGGTACCAATACCGTCCGCACCGTTGATGAGAATCATCGGAACAGTCGGCAAGTAGT 5830 Query 60048 AAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTT 60107 | | ||||| | || | || || || | ||| || | || |||||| | Sbjct 5831 ACTCGGGCTCGATACGCTGGCCGTCCTCAACAAGGTAGGTAAGAAGTGGGTCGTCCGCTG 5890 Query 60108 CGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTG 60167 | | || | ||| || || ||| ||| | |||||||| || | || || | Sbjct 5891 GGTGGAACACAGCGCGGGTCATCGCGGAGGTGTTGGTGAAAATGTAACGAGCGCTGGCAG 5950 Query 60168 CGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGT 60227 |||||||||| ||| | ||| || || || || ||||| |||| || | || |||| Sbjct 5951 CGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATGT 6010 Query 60228 TGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCAC 60287 |||| ||| || || || || || |||||||| || | | | ||||| ||||| Sbjct 6011 TGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCAC 6070 Query 60288 CGTGATGATATCCAGAATGTTCT--GAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 |||| || || | | |||||| || || || |||| | |||||||| ||||| || Sbjct 6071 CGTGGTGGTAGGCCG--TGTTCTCGGACACGTAACCACCAAGCTGTGCGACCTTAATCTC 6128 >seq1572 Length=3233 Score = 84.2 bits (92), Expect = 6e-11 Identities = 114/156 (73%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 251835 CAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTT 251894 ||| || |||||||||||||| |||||| || || || |||||||||| ||| || Sbjct 2487 CAGGTGCCCGATAGTCATACGAGAGGGAATGGCGTGCGGGTTGATGATGAGGTCCGGCAC 2546 Query 251895 CAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCC 251951 | || || |||||||| ||||| ||| |||| | || || | ||||| || || Sbjct 2547 GATACCCTCGGCAGTGAACGGCATGTCC---TCCTGGCGGTAGGTGATACCAATGGTACC 2603 Query 251952 CTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||| || |||||||| || |||||| ||||| || Sbjct 2604 CTTCTGACCGTGACGCGAGGCGAACTTGTCACCGAT 2639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471745526012014