Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq252 89.7 2e-12
seq1572 84.2 6e-11
>seq252
Length=28045
Score = 89.7 bits (98), Expect = 2e-12
Identities = 237/360 (66%), Gaps = 4/360 (1%)
Strand=Plus/Plus
Query 59988 AACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAAT 60047
|||| ||||||||||| | | || ||||| ||||||||||| | | | || | || |
Sbjct 5771 AACCGGTACCAATACCGTCCGCACCGTTGATGAGAATCATCGGAACAGTCGGCAAGTAGT 5830
Query 60048 AAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTT 60107
| | ||||| | || | || || || | ||| || | || |||||| |
Sbjct 5831 ACTCGGGCTCGATACGCTGGCCGTCCTCAACAAGGTAGGTAAGAAGTGGGTCGTCCGCTG 5890
Query 60108 CGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTG 60167
| | || | ||| || || ||| ||| | |||||||| || | || || |
Sbjct 5891 GGTGGAACACAGCGCGGGTCATCGCGGAGGTGTTGGTGAAAATGTAACGAGCGCTGGCAG 5950
Query 60168 CGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGT 60227
|||||||||| ||| | ||| || || || || ||||| |||| || | || ||||
Sbjct 5951 CGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATGT 6010
Query 60228 TGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCAC 60287
|||| ||| || || || || || |||||||| || | | | ||||| |||||
Sbjct 6011 TGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCAC 6070
Query 60288 CGTGATGATATCCAGAATGTTCT--GAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345
|||| || || | | |||||| || || || |||| | |||||||| ||||| ||
Sbjct 6071 CGTGGTGGTAGGCCG--TGTTCTCGGACACGTAACCACCAAGCTGTGCGACCTTAATCTC 6128
>seq1572
Length=3233
Score = 84.2 bits (92), Expect = 6e-11
Identities = 114/156 (73%), Gaps = 6/156 (4%)
Strand=Plus/Plus
Query 251835 CAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTT 251894
||| || |||||||||||||| |||||| || || || |||||||||| ||| ||
Sbjct 2487 CAGGTGCCCGATAGTCATACGAGAGGGAATGGCGTGCGGGTTGATGATGAGGTCCGGCAC 2546
Query 251895 CAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCC 251951
| || || |||||||| ||||| ||| |||| | || || | ||||| || ||
Sbjct 2547 GATACCCTCGGCAGTGAACGGCATGTCC---TCCTGGCGGTAGGTGATACCAATGGTACC 2603
Query 251952 CTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||| || |||||||| || |||||| ||||| ||
Sbjct 2604 CTTCTGACCGTGACGCGAGGCGAACTTGTCACCGAT 2639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471745526012014
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |