Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1002 161 1e-33
seq2414 156 5e-32
seq1626 150 2e-30
seq1321 122 1e-21
seq2511 102 1e-15
seq2344 100 3e-15
seq3111 93.3 5e-13
seq108 91.5 2e-12
seq1138 89.7 6e-12
seq694 89.7 6e-12
>seq1002
Length=3686
Score = 161 bits (178), Expect = 1e-33
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 18254 TCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCA 18313
||||| ||||| ||| ||||| |||| |||||| | ||| ||||| | | ||| |
Sbjct 1182 TCCAGAGCGGCACCGAGCACGGCGTCACTCTCGGCACACCCATCGGCATGATGGTGCAGA 1241
Query 18314 ACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACG 18373
|| ||||||||||| |||||| |||| | | | | ||||| || || ||||
Sbjct 1242 ACAAGGACCAGCGGCCACACGACTACACCGAGACGGACCTGTACCCGCGCCCGTCGCACG 1301
Query 18374 CCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGT 18433
|||||||||||||| |||||||||||||| ||||||||||||| ||||| || || | |
Sbjct 1302 CCGACTACACCTACCTGGCCAAGTACGGCGTCAAGGCGTCGTCTGGCGGCGGGCGCACCT 1361
Query 18434 CTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
|||| ||||||||| || || ||||| ||||| || | ||||||||
Sbjct 1362 CTGCGCGCGAGACCATCGGCCGTGTCGCGGCCGGTGCCATTGCCGAGAA 1410
Score = 129 bits (142), Expect = 7e-24
Identities = 130/164 (79%), Gaps = 4/164 (2%)
Strand=Plus/Plus
Query 19031 CGCCAAG-CGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGC 19089
||||||| ||| | | |||||| |||||||||| || || || ||| |||||| |||
Sbjct 1621 CGCCAAGGCGCGCA-ACGACAGCCTCGGCGGCACCGTCACCTGTGTGATCCGCAAC-TGC 1678
Query 19090 CGGCA-GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATG 19148
| || ||||| |||||||| ||||| |||||| ||||||||| ||| || |||||||||
Sbjct 1679 CCGCTCGGCCTTGGCGAGCCATGCTTCGACAAGCTCGAGGCCGTGCTTGCGCACGCCATG 1738
Query 19149 CTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTT 19192
|| |||||||| | |||||||| |||||| | ||| ||| ||
Sbjct 1739 CTCTCGATCCCCTCGACCAAGGGCTTCGAGTTCGGCTCCGGCTT 1782
>seq2414
Length=19474
Score = 156 bits (172), Expect = 5e-32
Identities = 319/480 (66%), Gaps = 6/480 (1%)
Strand=Plus/Minus
Query 1628124 GGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACGATCTCGGTGCACAG 1628183
|| ||||||||| || || || |||||||| ||| | |||||| ||||| ||
Sbjct 2589 GGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATCTCAGTGCAGAG 2530
Query 1628184 GTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTT 1628243
||||| |||| | | || || |||| ||||||||| | | |||| ||||||||||
Sbjct 2529 GTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTT 2470
Query 1628244 GTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTG 1628303
|| ||||||| |||| | || ||||| |||| ||| ||| ||| || |||| | ||
Sbjct 2469 GTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAACCAAAGCTT 2410
Query 1628304 GCGCGCGGGCACGACAGTCC-GCGCGCG--GCCCTNNNNNNNNNNNNNNNNNNNNNNNNN 1628360
| || | || ||| ||| | |||||
Sbjct 2409 CTGAGC---CTTGATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTG 2353
Query 1628361 NTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGA 1628420
|| || || | || | ||| |||||||| ||||| || || | ||| |
Sbjct 2352 CTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCACATGAGGGT 2293
Query 1628421 CCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAA 1628480
||||||||| | | | | | || ||| |||||||| |||| || ||||| ||
Sbjct 2292 CCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAA 2233
Query 1628481 GAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGAC 1628540
|||||| || || || |||||||||||||||||||||| ||||||||| ||||||
Sbjct 2232 GAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAA 2173
Query 1628541 AATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
| |||||||||||| ||||| |||||| ||||||||| || ||||||| ||||||
Sbjct 2172 GACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGCC 2113
Score = 154 bits (170), Expect = 2e-31
Identities = 216/303 (71%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121
|| |||||||||||| || || ||| | | | | ||||||||||| |||| |||||
Sbjct 2115 GCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTT 2056
Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181
||| | |||||||| || || | ||| | ||| ||| || | ||||| | |
Sbjct 2055 GGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAG 1996
Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241
|| || |||||||| | ||||||||| | ||||| ||||| ||||||||||||||
Sbjct 1995 ACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCC 1936
Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301
|| ||||||||| |||||||| | || || ||||| || || | || | ||| | ||
Sbjct 1935 ATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGT 1876
Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361
|| ||||||||||| || |||| || |||||| | || ||||||| || ||
Sbjct 1875 ACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTATA 1816
Query 1630362 GGT 1630364
|||
Sbjct 1815 GGT 1813
Score = 100 bits (110), Expect = 3e-15
Identities = 131/176 (74%), Gaps = 4/176 (2%)
Strand=Plus/Minus
Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATGACCTCGCACGCCTC 1627406
||||| ||||||||||| ||||| | ||||| | |||| ||| | ||| | |||
Sbjct 3152 AAGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGC-TCGAAGCACTC 3094
Query 1627407 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTT 1627466
| | ||| ||||||||||| |||| || || |||||| | || ||||| ||||||||
Sbjct 3093 GTTCCAGCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTT 3034
Query 1627467 GCGCAGGCCGTGCTGTC-GAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGGCCG 1627521
||||| ||||||| | || || |||| || || | | ||||||||||| || ||
Sbjct 3033 GCGCACACCGTGCTCGCTGATCT-GCGCACGGAGAGGGGCCCAGTCCCAGAGGTCG 2979
>seq1626
Length=18048
Score = 150 bits (166), Expect = 2e-30
Identities = 109/126 (87%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
||||| ||| | |||||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 10256 CTCTTCGAGATCATCCTCGCGGCCAACTACCTCGACATCAAGCCCCTCCTCGACGTTGGA 10315
Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287
|||||| | || ||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 10316 TGCAAGACCGTCGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATCCGCAAGCTCTTC 10375
Query 1592288 AACATC 1592293
||||||
Sbjct 10376 AACATC 10381
>seq1321
Length=24731
Score = 122 bits (134), Expect = 1e-21
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 868708 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 868767
||||||| |||||| ||||||| |||||||| |||||||| | ||||||||| |||
Sbjct 19512 CACGCGCGACTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAA 19453
Query 868768 CGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGAC 868827
|||||||| | | ||| |||| ||| | ||||||| ||| || |||||||| ||
Sbjct 19452 CGGGTTGGTGGCATGGTACAGCTTCTCGTAGCCGAGCGCGACGACGAGCCGGTCGGCCAC 19393
Query 868828 AAACTCGATGTACTGGCACATG 868849
||| || |||||||||||||||
Sbjct 19392 AAATTCCATGTACTGGCACATG 19371
Score = 105 bits (116), Expect = 8e-17
Identities = 140/194 (72%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| |||||||| ||| | |||||| |||| ||||||| |||| || || ||||||
Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| |||||||| ||| ||||||||| ||||||||||| || ||||||
Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT-TGATCCACTTCATCGCCCA 869358
|||| || ||| | ||| ||| || || |||| |||| | ||||||
Sbjct 19058 GCGATCAGACGCGTGCGGAAG-------GGCATATCTGGTGTGATGTACTTGAGCGCCCA 19006
Query 869359 GTCGGCCTTTTTCC 869372
||||||||| ||||
Sbjct 19005 GTCGGCCTTCTTCC 18992
>seq2511
Length=1635
Score = 102 bits (112), Expect = 1e-15
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 507714 TCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 507773
||||||| | |||||| | |||||||||||||| ||||| |||||||||||| |||
Sbjct 1331 TCAACCTCTCGGTCACGTCGCCATACAACGCCGACTTCGACGGAGACGAGATGAACTTGC 1390
Query 507774 ACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGCGTGTCGCTCA 507833
||||||| || || ||| | ||||||| ||| ||| || | | | ||| |
Sbjct 1391 ACGTGCCTCAATCAGAGGAGACGCGCGCAGAGCTGAGCCAGATCGCATGGGTGCCAAGGC 1450
Query 507834 AGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGACGCCCTC 507889
| | | | ||||| |||||||||||||| |||| ||| | ||| |||| | |||
Sbjct 1451 AAATCATTTCGCCTCAGGCCAACAAGCCTGTCATGGGCATTGTCCAGGACACTCTC 1506
Score = 86.0 bits (94), Expect = 8e-11
Identities = 116/159 (73%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 507113 AAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACCGCG 507172
||||||||||||||| | | || ||||| | ||||||||||| ||| |||| | ||
Sbjct 910 AAGGGCAAGGAGGGTCGTCTTCGTGGCAACTTGATGGGCAAGCGTGTCGACTTCTCTGCC 969
Query 507173 CGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGCC-CTATGA 507231
|| | ||||| | | |||||| | ||| | | |||||||| || || || | || |
Sbjct 970 CGTACTGTCATTACCGGTGACCCCAACATCCAGCTCGACGAGGTCGGTGTCCCGCGATCA 1029
Query 507232 GATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCC 507270
|||| || ||| ||||| | ||||||||||| || ||
Sbjct 1030 -ATCGCCATGACTCTCACGTACCCCGAGCGCGTCACACC 1067
>seq2344
Length=28079
Score = 100 bits (110), Expect = 3e-15
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497
||||||||| | ||||| |||| |||||| || || ||||| | || | ||| | |
Sbjct 888 GCCTCGGTGGCAATGCGCTCGAAGATGTCGGCAACGAAGGAGTTGAGGATGGCCATGGCC 829
Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAG 1254557
||||||||||| || ||||||||| ||||||||||| || ||||||| | ||||||
Sbjct 828 TTGTTGGAGATACCGGTGTCGGGGTGGACCTGCTTGAGGACACGGTAGATGTAGGACGAG 769
Query 1254558 TACGA 1254562
|||||
Sbjct 768 TACGA 764
>seq3111
Length=26931
Score = 93.3 bits (102), Expect = 5e-13
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792
|||||||||||||||||||| |||| | || | || || || || | ||| ||||||
Sbjct 3345 CCGTCGGTGCCGTTCTTGAAACCGACCGACATGGAGAGAGCGGAAGCAAGCTCACGGTGC 3286
Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGC 1726833
||||| |||||| ||||||||||| | ||||||||||||
Sbjct 3285 ACCTGCGACTCGGTGGTGCGCGCGCCGATGGCGCCCCACGC 3245
>seq108
Length=36985
Score = 91.5 bits (100), Expect = 2e-12
Identities = 145/203 (71%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 92609 CTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGG 92668
||| | ||||||| |||||||||||||| || || ||| | ||| |||| ||||
Sbjct 30410 CTGCCTCGTGAGGCGCTCCTGCACCTGGAGACGCCTAGAGAACGTCTCGGCGATACGCGC 30351
Query 92669 GATCTTGCTCAGGCCGATGATCCTGCCCGT-GGGCAGGTAGCCCACGTGGGCCTTGCCCA 92727
| |||| || |||| || | || || ||| | ||| || | | | ||||||
Sbjct 30350 AAGCTTGGAGAGACCGAGGA-CGAGCTTGTTGGGGATGTAACCAATGCTGATCTTGCCGG 30292
Query 92728 TAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCA 92787
| ||||| | || ||||||||||| | |||||| | |||| ||||||||| || ||||
Sbjct 30291 TGAAGGGGACGAGGTGGTGCTCGCAGAGGGAGAAGACATCGATGTCGCGCACAATGACCA 30232
Query 92788 TCTCGCCCGAGG-CCTCGGCAAA 92809
|||| | || || ||||||| ||
Sbjct 30231 TCTC-CTCGTGGTCCTCGGCGAA 30210
>seq1138
Length=41311
Score = 89.7 bits (98), Expect = 6e-12
Identities = 188/277 (68%), Gaps = 19/277 (7%)
Strand=Plus/Plus
Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439
||||| || || |||||||| ||| ||| |||| | || || |||||||
Sbjct 25871 CCGGTGGACCCGAAGCCGCCAGCGCCTCGCGTGGTGGCCTCGAGGTCGTCGACCT----- 25925
Query 1572440 GGCTCGGGTTGGGCA-----ATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCT 1572494
||| | |||| || | ||| |||| || | ||| |||||||| |||||||
Sbjct 25926 GGCGCACGTTGCCCATGTGGACCTTCTCGAGGATGAGCTGCGCGATGCGG---TCGCCCT 25982
Query 1572495 -GGACAACGTG--GTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGAT 1572551
||||| | | |||||||||| | |||||| || | || ||||||||||| |
Sbjct 25983 TGGACACGGCGAAGTCGGCGTCGCCATAGTTGAACAGGAGCACCTTGACCTCGCCGCGGT 26042
Query 1572552 AGTCGGCATCGATGACGCCTGCGCCGACGTCGAT---GCCCCTGACGGCCAGGGACGAGC 1572608
||||||| ||||| ||||| ||||| |||||| | | | | |||||| ||||
Sbjct 26043 AGTCGGCGTCGATCACGCCCGCGCCCGTGTCGATCGAGTGCTTCGCCGCCAGGCCGGAGC 26102
Query 1572609 GCGGCGCCACGCGCCCATAGTAGCCCGCGGGTATGGC 1572645
||||||| | |||||| || ||| |||| | |||
Sbjct 26103 GCGGCGCGATGCGCCCGTACGTGCCGACGGGGACGGC 26139
>seq694
Length=4614
Score = 89.7 bits (98), Expect = 6e-12
Identities = 144/200 (72%), Gaps = 9/200 (5%)
Strand=Plus/Plus
Query 733054 TCAAGATCGTGACGCGCGCCATGCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCC 733113
|||||||| | |||||| | ||| | |||||| | |||||||| | ||||||||||
Sbjct 3776 TCAAGATCTTAACGCGCCAGACGCGTCGCCCCGAGCTCGGCGACAAGTTCTCGTCGCGCC 3835
Query 733114 ACGGCCAAAAGGG-CACCGTGGGC--AGCGTGCGCTCCACCGAGGACATGCCCTGGTCGC 733170
||||||| ||||| |||| | | ||||| | | | |||||||||| | ||
Sbjct 3836 ACGGCCAGAAGGGTGTGTGTGGCCTTATCGTGC-CGCAGC--AGGACATGCC--GTTCAA 3890
Query 733171 CGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGA 733230
|| | |||| | |||| ||||| | || |||||||||| ||||||| || ||||
Sbjct 3891 CG-ACCTCGGCATCTCGCCGGACATTATTATGAACCCGCACGGTTTCCCGTCACGTATGA 3949
Query 733231 CCATGGGCAAGATGCTCGAG 733250
| | ||||||||| |||||
Sbjct 3950 CGGTCGGCAAGATGATCGAG 3969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106825548781574
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