Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1002 161 1e-33 seq2414 156 5e-32 seq1626 150 2e-30 seq1321 122 1e-21 seq2511 102 1e-15 seq2344 100 3e-15 seq3111 93.3 5e-13 seq108 91.5 2e-12 seq1138 89.7 6e-12 seq694 89.7 6e-12 >seq1002 Length=3686 Score = 161 bits (178), Expect = 1e-33 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18254 TCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCA 18313 ||||| ||||| ||| ||||| |||| |||||| | ||| ||||| | | ||| | Sbjct 1182 TCCAGAGCGGCACCGAGCACGGCGTCACTCTCGGCACACCCATCGGCATGATGGTGCAGA 1241 Query 18314 ACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACG 18373 || ||||||||||| |||||| |||| | | | | ||||| || || |||| Sbjct 1242 ACAAGGACCAGCGGCCACACGACTACACCGAGACGGACCTGTACCCGCGCCCGTCGCACG 1301 Query 18374 CCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGT 18433 |||||||||||||| |||||||||||||| ||||||||||||| ||||| || || | | Sbjct 1302 CCGACTACACCTACCTGGCCAAGTACGGCGTCAAGGCGTCGTCTGGCGGCGGGCGCACCT 1361 Query 18434 CTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 |||| ||||||||| || || ||||| ||||| || | |||||||| Sbjct 1362 CTGCGCGCGAGACCATCGGCCGTGTCGCGGCCGGTGCCATTGCCGAGAA 1410 Score = 129 bits (142), Expect = 7e-24 Identities = 130/164 (79%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 19031 CGCCAAG-CGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGC 19089 ||||||| ||| | | |||||| |||||||||| || || || ||| |||||| ||| Sbjct 1621 CGCCAAGGCGCGCA-ACGACAGCCTCGGCGGCACCGTCACCTGTGTGATCCGCAAC-TGC 1678 Query 19090 CGGCA-GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATG 19148 | || ||||| |||||||| ||||| |||||| ||||||||| ||| || ||||||||| Sbjct 1679 CCGCTCGGCCTTGGCGAGCCATGCTTCGACAAGCTCGAGGCCGTGCTTGCGCACGCCATG 1738 Query 19149 CTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTT 19192 || |||||||| | |||||||| |||||| | ||| ||| || Sbjct 1739 CTCTCGATCCCCTCGACCAAGGGCTTCGAGTTCGGCTCCGGCTT 1782 >seq2414 Length=19474 Score = 156 bits (172), Expect = 5e-32 Identities = 319/480 (66%), Gaps = 6/480 (1%) Strand=Plus/Minus Query 1628124 GGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACGATCTCGGTGCACAG 1628183 || ||||||||| || || || |||||||| ||| | |||||| ||||| || Sbjct 2589 GGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATCTCAGTGCAGAG 2530 Query 1628184 GTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTT 1628243 ||||| |||| | | || || |||| ||||||||| | | |||| |||||||||| Sbjct 2529 GTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTT 2470 Query 1628244 GTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTG 1628303 || ||||||| |||| | || ||||| |||| ||| ||| ||| || |||| | || Sbjct 2469 GTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAACCAAAGCTT 2410 Query 1628304 GCGCGCGGGCACGACAGTCC-GCGCGCG--GCCCTNNNNNNNNNNNNNNNNNNNNNNNNN 1628360 | || | || ||| ||| | ||||| Sbjct 2409 CTGAGC---CTTGATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTG 2353 Query 1628361 NTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGA 1628420 || || || | || | ||| |||||||| ||||| || || | ||| | Sbjct 2352 CTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCACATGAGGGT 2293 Query 1628421 CCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAA 1628480 ||||||||| | | | | | || ||| |||||||| |||| || ||||| || Sbjct 2292 CCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAA 2233 Query 1628481 GAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGAC 1628540 |||||| || || || |||||||||||||||||||||| ||||||||| |||||| Sbjct 2232 GAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAA 2173 Query 1628541 AATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | |||||||||||| ||||| |||||| ||||||||| || ||||||| |||||| Sbjct 2172 GACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGCC 2113 Score = 154 bits (170), Expect = 2e-31 Identities = 216/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||| || || ||| | | | | ||||||||||| |||| ||||| Sbjct 2115 GCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTT 2056 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| | |||||||| || || | ||| | ||| ||| || | ||||| | | Sbjct 2055 GGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAG 1996 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || || |||||||| | ||||||||| | ||||| ||||| |||||||||||||| Sbjct 1995 ACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCC 1936 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || ||||||||| |||||||| | || || ||||| || || | || | ||| | || Sbjct 1935 ATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGT 1876 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || ||||||||||| || |||| || |||||| | || ||||||| || || Sbjct 1875 ACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTATA 1816 Query 1630362 GGT 1630364 ||| Sbjct 1815 GGT 1813 Score = 100 bits (110), Expect = 3e-15 Identities = 131/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATGACCTCGCACGCCTC 1627406 ||||| ||||||||||| ||||| | ||||| | |||| ||| | ||| | ||| Sbjct 3152 AAGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGC-TCGAAGCACTC 3094 Query 1627407 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTT 1627466 | | ||| ||||||||||| |||| || || |||||| | || ||||| |||||||| Sbjct 3093 GTTCCAGCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTT 3034 Query 1627467 GCGCAGGCCGTGCTGTC-GAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGGCCG 1627521 ||||| ||||||| | || || |||| || || | | ||||||||||| || || Sbjct 3033 GCGCACACCGTGCTCGCTGATCT-GCGCACGGAGAGGGGCCCAGTCCCAGAGGTCG 2979 >seq1626 Length=18048 Score = 150 bits (166), Expect = 2e-30 Identities = 109/126 (87%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | |||||||| ||||||||||||||||||||||| || ||||| |||| Sbjct 10256 CTCTTCGAGATCATCCTCGCGGCCAACTACCTCGACATCAAGCCCCTCCTCGACGTTGGA 10315 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | || ||||||||||||||||||||| | |||||||||||||||||| ||| Sbjct 10316 TGCAAGACCGTCGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATCCGCAAGCTCTTC 10375 Query 1592288 AACATC 1592293 |||||| Sbjct 10376 AACATC 10381 >seq1321 Length=24731 Score = 122 bits (134), Expect = 1e-21 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 868708 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 868767 ||||||| |||||| ||||||| |||||||| |||||||| | ||||||||| ||| Sbjct 19512 CACGCGCGACTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAA 19453 Query 868768 CGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGAC 868827 |||||||| | | ||| |||| ||| | ||||||| ||| || |||||||| || Sbjct 19452 CGGGTTGGTGGCATGGTACAGCTTCTCGTAGCCGAGCGCGACGACGAGCCGGTCGGCCAC 19393 Query 868828 AAACTCGATGTACTGGCACATG 868849 ||| || ||||||||||||||| Sbjct 19392 AAATTCCATGTACTGGCACATG 19371 Score = 105 bits (116), Expect = 8e-17 Identities = 140/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| ||||||| |||| || || |||||| Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||| ||| ||||||||| ||||||||||| || |||||| Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT-TGATCCACTTCATCGCCCA 869358 |||| || ||| | ||| ||| || || |||| |||| | |||||| Sbjct 19058 GCGATCAGACGCGTGCGGAAG-------GGCATATCTGGTGTGATGTACTTGAGCGCCCA 19006 Query 869359 GTCGGCCTTTTTCC 869372 ||||||||| |||| Sbjct 19005 GTCGGCCTTCTTCC 18992 >seq2511 Length=1635 Score = 102 bits (112), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 507714 TCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 507773 ||||||| | |||||| | |||||||||||||| ||||| |||||||||||| ||| Sbjct 1331 TCAACCTCTCGGTCACGTCGCCATACAACGCCGACTTCGACGGAGACGAGATGAACTTGC 1390 Query 507774 ACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGCGTGTCGCTCA 507833 ||||||| || || ||| | ||||||| ||| ||| || | | | ||| | Sbjct 1391 ACGTGCCTCAATCAGAGGAGACGCGCGCAGAGCTGAGCCAGATCGCATGGGTGCCAAGGC 1450 Query 507834 AGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGACGCCCTC 507889 | | | | ||||| |||||||||||||| |||| ||| | ||| |||| | ||| Sbjct 1451 AAATCATTTCGCCTCAGGCCAACAAGCCTGTCATGGGCATTGTCCAGGACACTCTC 1506 Score = 86.0 bits (94), Expect = 8e-11 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 507113 AAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACCGCG 507172 ||||||||||||||| | | || ||||| | ||||||||||| ||| |||| | || Sbjct 910 AAGGGCAAGGAGGGTCGTCTTCGTGGCAACTTGATGGGCAAGCGTGTCGACTTCTCTGCC 969 Query 507173 CGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGCC-CTATGA 507231 || | ||||| | | |||||| | ||| | | |||||||| || || || | || | Sbjct 970 CGTACTGTCATTACCGGTGACCCCAACATCCAGCTCGACGAGGTCGGTGTCCCGCGATCA 1029 Query 507232 GATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCC 507270 |||| || ||| ||||| | ||||||||||| || || Sbjct 1030 -ATCGCCATGACTCTCACGTACCCCGAGCGCGTCACACC 1067 >seq2344 Length=28079 Score = 100 bits (110), Expect = 3e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 ||||||||| | ||||| |||| |||||| || || ||||| | || | ||| | | Sbjct 888 GCCTCGGTGGCAATGCGCTCGAAGATGTCGGCAACGAAGGAGTTGAGGATGGCCATGGCC 829 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAG 1254557 ||||||||||| || ||||||||| ||||||||||| || ||||||| | |||||| Sbjct 828 TTGTTGGAGATACCGGTGTCGGGGTGGACCTGCTTGAGGACACGGTAGATGTAGGACGAG 769 Query 1254558 TACGA 1254562 ||||| Sbjct 768 TACGA 764 >seq3111 Length=26931 Score = 93.3 bits (102), Expect = 5e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 |||||||||||||||||||| |||| | || | || || || || | ||| |||||| Sbjct 3345 CCGTCGGTGCCGTTCTTGAAACCGACCGACATGGAGAGAGCGGAAGCAAGCTCACGGTGC 3286 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGC 1726833 ||||| |||||| ||||||||||| | |||||||||||| Sbjct 3285 ACCTGCGACTCGGTGGTGCGCGCGCCGATGGCGCCCCACGC 3245 >seq108 Length=36985 Score = 91.5 bits (100), Expect = 2e-12 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 92609 CTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGG 92668 ||| | ||||||| |||||||||||||| || || ||| | ||| |||| |||| Sbjct 30410 CTGCCTCGTGAGGCGCTCCTGCACCTGGAGACGCCTAGAGAACGTCTCGGCGATACGCGC 30351 Query 92669 GATCTTGCTCAGGCCGATGATCCTGCCCGT-GGGCAGGTAGCCCACGTGGGCCTTGCCCA 92727 | |||| || |||| || | || || ||| | ||| || | | | |||||| Sbjct 30350 AAGCTTGGAGAGACCGAGGA-CGAGCTTGTTGGGGATGTAACCAATGCTGATCTTGCCGG 30292 Query 92728 TAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCA 92787 | ||||| | || ||||||||||| | |||||| | |||| ||||||||| || |||| Sbjct 30291 TGAAGGGGACGAGGTGGTGCTCGCAGAGGGAGAAGACATCGATGTCGCGCACAATGACCA 30232 Query 92788 TCTCGCCCGAGG-CCTCGGCAAA 92809 |||| | || || ||||||| || Sbjct 30231 TCTC-CTCGTGGTCCTCGGCGAA 30210 >seq1138 Length=41311 Score = 89.7 bits (98), Expect = 6e-12 Identities = 188/277 (68%), Gaps = 19/277 (7%) Strand=Plus/Plus Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439 ||||| || || |||||||| ||| ||| |||| | || || ||||||| Sbjct 25871 CCGGTGGACCCGAAGCCGCCAGCGCCTCGCGTGGTGGCCTCGAGGTCGTCGACCT----- 25925 Query 1572440 GGCTCGGGTTGGGCA-----ATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCT 1572494 ||| | |||| || | ||| |||| || | ||| |||||||| ||||||| Sbjct 25926 GGCGCACGTTGCCCATGTGGACCTTCTCGAGGATGAGCTGCGCGATGCGG---TCGCCCT 25982 Query 1572495 -GGACAACGTG--GTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGAT 1572551 ||||| | | |||||||||| | |||||| || | || ||||||||||| | Sbjct 25983 TGGACACGGCGAAGTCGGCGTCGCCATAGTTGAACAGGAGCACCTTGACCTCGCCGCGGT 26042 Query 1572552 AGTCGGCATCGATGACGCCTGCGCCGACGTCGAT---GCCCCTGACGGCCAGGGACGAGC 1572608 ||||||| ||||| ||||| ||||| |||||| | | | | |||||| |||| Sbjct 26043 AGTCGGCGTCGATCACGCCCGCGCCCGTGTCGATCGAGTGCTTCGCCGCCAGGCCGGAGC 26102 Query 1572609 GCGGCGCCACGCGCCCATAGTAGCCCGCGGGTATGGC 1572645 ||||||| | |||||| || ||| |||| | ||| Sbjct 26103 GCGGCGCGATGCGCCCGTACGTGCCGACGGGGACGGC 26139 >seq694 Length=4614 Score = 89.7 bits (98), Expect = 6e-12 Identities = 144/200 (72%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 733054 TCAAGATCGTGACGCGCGCCATGCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCC 733113 |||||||| | |||||| | ||| | |||||| | |||||||| | |||||||||| Sbjct 3776 TCAAGATCTTAACGCGCCAGACGCGTCGCCCCGAGCTCGGCGACAAGTTCTCGTCGCGCC 3835 Query 733114 ACGGCCAAAAGGG-CACCGTGGGC--AGCGTGCGCTCCACCGAGGACATGCCCTGGTCGC 733170 ||||||| ||||| |||| | | ||||| | | | |||||||||| | || Sbjct 3836 ACGGCCAGAAGGGTGTGTGTGGCCTTATCGTGC-CGCAGC--AGGACATGCC--GTTCAA 3890 Query 733171 CGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGA 733230 || | |||| | |||| ||||| | || |||||||||| ||||||| || |||| Sbjct 3891 CG-ACCTCGGCATCTCGCCGGACATTATTATGAACCCGCACGGTTTCCCGTCACGTATGA 3949 Query 733231 CCATGGGCAAGATGCTCGAG 733250 | | ||||||||| ||||| Sbjct 3950 CGGTCGGCAAGATGATCGAG 3969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106825548781574