Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2414 165 1e-34 seq1626 154 2e-31 seq2930 122 1e-21 seq1321 122 1e-21 seq154 122 1e-21 seq2511 120 5e-21 seq2344 116 6e-20 seq1684 104 4e-16 seq3111 95.1 2e-13 seq108 89.7 8e-12 >seq2414 Length=19474 Score = 165 bits (182), Expect = 1e-34 Identities = 305/453 (67%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||||||| ||| | || ||| ||||| ||||||| |||| | ||||||| |||| | Sbjct 2561 GGCGACGAGTACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGC 2502 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 |||||||| | |||| |||||||||||| |||||| |||| |||| ||||| Sbjct 2501 TGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCA 2442 Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCG- 2071742 |||| ||| || ||| || |||||| || | || || | || ||| Sbjct 2441 GTCTGAGCCTCGAGGATAGCGAACCAAA----GCTTCTGAGCCTTGATGGTCTTGCGACC 2386 Query 2071743 ---GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTG 2071799 ||||| | || || || | | |||| ||| Sbjct 2385 CTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGC 2326 Query 2071800 CAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCG 2071859 |||||||| ||||| ||||| | ||| | |||||||||| | | | | || || Sbjct 2325 AAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTT 2266 Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| || |||||| |||| ||| |||| ||||| || || || || |||||||||| Sbjct 2265 CATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTT 2206 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 |||||||||||| |||||||| |||||| || |||||||||||| ||||| ||||| Sbjct 2205 GCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTA 2146 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | ||||||||| || ||||||| |||||| Sbjct 2145 GATGGCAAAGGCACCGGGGCGCTTGTTGCCGCC 2113 Score = 127 bits (140), Expect = 3e-23 Identities = 186/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| || || || ||| | | | | ||||||||||| || | ||||| Sbjct 2115 GCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTT 2056 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| | |||||||| || || | ||| | |||| ||| || | ||||| | | Sbjct 2055 GGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAG 1996 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || || |||||||| | ||||||||| | ||||| | || || || ||||||||||| Sbjct 1995 ACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCC 1936 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 || ||||||||| |||||||| | | || ||||| || || | || | | | | || Sbjct 1935 ATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGT 1876 Query 2073777 GCCGGCATTGAAGAGCGTGGGCG 2073799 || || |||||||| || |||| Sbjct 1875 ACCAGCGTTGAAGAGGGTAGGCG 1853 Score = 93.3 bits (102), Expect = 7e-13 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 2069617 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCTC 2069675 ||||| ||||||||||| ||||| | ||||| | ||| ||| | ||| | ||| Sbjct 3152 AAGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGC-TCGAAGCACTC 3094 Query 2069676 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTT 2069735 | | ||| ||||||||||| |||| || || |||||| | || ||||| |||||||| Sbjct 3093 GTTCCAGCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTT 3034 Query 2069736 GCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCCG 2069790 ||||| |||| || | | | |||| || || | | ||||||||||| || || Sbjct 3033 GCGCACACCGTGCTCGCTGATCTGCGCACGGAGAGGGGCCCAGTCCCAGAGGTCG 2979 >seq1626 Length=18048 Score = 154 bits (170), Expect = 2e-31 Identities = 120/143 (84%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | ||||| ||| | |||||||| |||||||||||||||||||||| Sbjct 10239 AGGTCGACCAGGAGATGCTCTTCGAGATCATCCTCGCGGCCAACTACCTCGACATCAAGC 10298 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 |||||||||| | || ||||||||||| |||||| | |||||||||||| | ||||||| Sbjct 10299 CCCTCCTCGACGTTGGATGCAAGACCGTCGCCAACATGATCAAGGGCAAGACCCCCGAGG 10358 Query 2035732 ACATCCGCAAGACCTTTAACATC 2035754 | ||||||||| ||| |||||| Sbjct 10359 AGATCCGCAAGCTCTTCAACATC 10381 >seq2930 Length=4448 Score = 122 bits (134), Expect = 1e-21 Identities = 215/311 (69%), Gaps = 12/311 (4%) Strand=Plus/Minus Query 429513 CAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGG 429572 ||| |||| |||| ||| |||||||| || | || |||||| ||| || | ||||| Sbjct 4202 CAGTTCGGCTGGATCGTTGAGCGCCATCTCAGGACTGGCGACTACGTCCTCTTCAACCGT 4143 Query 429573 CAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCC--CATGCCCGGTC 429630 || || |||||||||| ||| ||| | ||| ||| | | |||| | Sbjct 4142 CAACCCTCGCTCCACAAAATGTCCATGATGTGTCACC--GTGTTCGCGTCATGAACTACT 4085 Query 429631 GCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACG 429690 ||||||||| |||||||| | || ||| | |||||||||||||| ||||| |||| Sbjct 4084 CCACCTTCCGTCTCAACCTCTCGGTCACGTCGCCATACAACGCCGACTTCGACGGAGACG 4025 Query 429691 AGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGG 429750 |||||||| ||||||| || || || ||| | | || ||||| || ||| | | Sbjct 4024 AGATGAACTTGCACGTTCCTCAATCAGAGGAGACCCGTGCCGAGCTCAGCCAGATC---- 3969 Query 429751 GCGTGGCCCTCAAGGC----CGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTG 429806 || ||| |||||| | | ||||| |||||||||||||| |||| || | ||| Sbjct 3968 GCATGGGTGCCAAGGCAAATCATTTCGCCCCAGGCCAACAAGCCTGTCATGGGTATTGTG 3909 Query 429807 ATGGACGCCCT 429817 |||| |||| Sbjct 3908 CAGGACACCCT 3898 >seq1321 Length=24731 Score = 122 bits (134), Expect = 1e-21 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 793916 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 793975 ||||||| |||||| ||||||| |||||||| |||||||| | ||||||||| ||| Sbjct 19512 CACGCGCGACTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAA 19453 Query 793976 CGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGAC 794035 |||||||| | |||| |||||||| | ||||||| | | || |||||||| || Sbjct 19452 CGGGTTGGTGGCATGGTACAGCTTCTCGTAGCCGAGCGCGACGACGAGCCGGTCGGCCAC 19393 Query 794036 GAATTCAATGTACTGGCACATG 794057 ||||| ||||||||||||||| Sbjct 19392 AAATTCCATGTACTGGCACATG 19371 Score = 89.7 bits (98), Expect = 8e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| ||| ||||||| |||| || || |||||| Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||| ||||||||| ||||||||||| || |||||| Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059 Query 794461 CCGACGAGCCGC 794472 ||| || ||| Sbjct 19058 GCGATCAGACGC 19047 >seq154 Length=19388 Score = 122 bits (134), Expect = 1e-21 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||| ||||| |||| ||||||| | | || || ||| | | ||| Sbjct 326 TTGGTGACGGCCTTGGTGCCCTCGGAGATGGCGTGCTTCGAGAGCTCACCGGGGAGGATG 267 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG-CGC 1485593 || || |||||||||||||||||||| | ||| || ||| | ||| || || ||| Sbjct 266 AGACGGACGGCGGTCTGGATCTCGCGCGACGAGATGGTCGAGCGGTGGTT-GTACGACGC 208 Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || | ||||||||| | ||||| |||| |||||| |||| |||||||| | ||| Sbjct 207 GAGCTTGGACGCCTCGGTGGCAATGCGCTCGAAGATGTCGCTGACGAACGAGTTGAGGAT 148 Query 1485654 CGACATCGATTTGTTG 1485669 | ||| | |||||| Sbjct 147 GGCCATGGCCTTGTTG 132 >seq2511 Length=1635 Score = 120 bits (132), Expect = 5e-21 Identities = 206/293 (70%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 429513 CAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGG 429572 ||| |||| |||| |||||||||||| || | || |||||| || || | ||||| Sbjct 1201 CAGTTCGGCTGGATCGTCGAGCGCCATCTTAGGACAGGCGACTATGTCCTCTTCAACCGT 1260 Query 429573 CAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTG-GTGCCCATGCCCGG-TC 429630 || || || ||||||| | ||| ||| | |||| ||| ||| | ||| | || Sbjct 1261 CAACCCTCTCTCCACAAGATGTCCATGATGTGCCACCGCGTGCGTGTC-ATGAACTACTC 1319 Query 429631 GCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACG 429690 | || ||||| |||||||| | || ||| | |||||||||||||| ||||| |||| Sbjct 1320 G-ACATTCCGTCTCAACCTCTCGGTCACGTCGCCATACAACGCCGACTTCGACGGAGACG 1378 Query 429691 AGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGG 429750 |||||||| |||||||||| || || ||| | | ||||| || | ||| | | Sbjct 1379 AGATGAACTTGCACGTGCCTCAATCAGAGGAGACGCGCGCAGAGCTGAGCCAGATC---- 1434 Query 429751 GCGTGGCCCTCAAGGC----CGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 429799 || ||| |||||| | | ||||| |||||||||||||| |||| || Sbjct 1435 GCATGGGTGCCAAGGCAAATCATTTCGCCTCAGGCCAACAAGCCTGTCATGGG 1487 >seq2344 Length=28079 Score = 116 bits (128), Expect = 6e-20 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||| ||||||| ||| || |||||| | | Sbjct 1109 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGATGGCGTGCTTGGAAAGCTCGCCGGGAAG 1050 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || |||||||||||||||||||| | ||| || ||| | ||| || || Sbjct 1049 GATGAGACGGACGGCGGTCTGGATCTCGCGCGACGAGATGGTCGAGCGGTGGTT-GTACG 991 Query 1485591 -CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| || | |||||||| |||| || |||| |||||| || |||||||| Sbjct 990 ACGCGAGCTTGGAAGCCTCGGTAGCGATACGCTCGAAAATGTCGGCAACGAACGAGTT 933 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 ||||||||| | ||||| |||| |||||| || || ||||| | ||| | ||| | Sbjct 888 GCCTCGGTGGCAATGCGCTCGAAGATGTCGGCAACGAAGGAGTTGAGGATGGCCATGGCC 829 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAG 1485723 ||||||||||| || ||||||||| ||||||||||| || ||| | |||||||| Sbjct 828 TTGTTGGAGATACCGGTGTCGGGGTGGACCTGCTTGAGGACACGGTAGATGTAGGACGAG 769 Query 1485724 TACGA 1485728 ||||| Sbjct 768 TACGA 764 >seq1684 Length=6100 Score = 104 bits (114), Expect = 4e-16 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||| ||||||| ||| || |||||| | | Sbjct 141 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGATGGCGTGCTTGGAAAGCTCGCCGGGAAG 82 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||| || || |||||||||||||||||||| Sbjct 81 GATGAGACGGACGGCGGTCTGGATCTCGCG 52 >seq3111 Length=26931 Score = 95.1 bits (104), Expect = 2e-13 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 2175077 GCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTG 2175136 ||||||||||||||| || || ||||||| || | || || || || | || ||||| Sbjct 3346 GCCGTCGGTGCCGTTCTTGAAACCGACCGACATGGAGAGAGCGGAAGCAAGCTCACGGTG 3287 Query 2175137 CACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGC 2175178 |||||| |||||||||||||||||| | |||||||||||| Sbjct 3286 CACCTGCGACTCGGTGGTGCGCGCGCCGATGGCGCCCCACGC 3245 >seq108 Length=36985 Score = 89.7 bits (98), Expect = 8e-12 Identities = 187/271 (69%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 118657 CCTCGAGCACGACGCCGACGCCGCGCGCGCCCG-TGACCTCGCTGATGCTCTCGGCGATC 118715 |||| | |||||| |||||||||| | ||| | || |||| ||||| || | | Sbjct 30468 CCTCCATGACGACGGCGACGCCGCGTG-GCCGGATGGCCTCCATGATGGCGAGCGCAACC 30410 Query 118716 TGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGG 118775 || | |||||| |||||||||||||| || |||| | | ||| |||| |||| Sbjct 30409 TGCCTCGTGAGGCGCTCCTGCACCTGGAGACGCCTAGAGAACGTCTCGGCGATACGCGCA 30350 Query 118776 ATCTTGCTCAGGCCGATGATCCTGCCCGC-GGGCAGGTAGCCCACGTGCGCCTTGCCGAT 118834 | |||| || |||| || | || | ||| | ||| || | | ||||||| | Sbjct 30349 AGCTTGGAGAGACCGAGGA-CGAGCTTGTTGGGGATGTAACCAATGCTGATCTTGCCGGT 30291 Query 118835 AAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGCGCACGGTCACCAT 118894 ||||| | || ||||||||||| | |||||| | || ||||||||||| | ||||| Sbjct 30290 GAAGGGGACGAGGTGGTGCTCGCAGAGGGAGAAGACATCGATGTCGCGCACAATGACCAT 30231 Query 118895 CTCGCCCGACGT-CTCGGCAAAGAGGGCGTC 118924 ||| | || || |||||| || | ||| || Sbjct 30230 CTC-CTCGTGGTCCTCGGCGAACACGGCATC 30201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915839836427858