Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 165 1e-34
seq1626 154 2e-31
seq2930 122 1e-21
seq1321 122 1e-21
seq154 122 1e-21
seq2511 120 5e-21
seq2344 116 6e-20
seq1684 104 4e-16
seq3111 95.1 2e-13
seq108 89.7 8e-12
>seq2414
Length=19474
Score = 165 bits (182), Expect = 1e-34
Identities = 305/453 (67%), Gaps = 8/453 (2%)
Strand=Plus/Minus
Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623
|||||||| ||| | || ||| ||||| ||||||| |||| | ||||||| |||| |
Sbjct 2561 GGCGACGAGTACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGC 2502
Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683
|||||||| | |||| |||||||||||| |||||| |||| |||| |||||
Sbjct 2501 TGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCA 2442
Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCG- 2071742
|||| ||| || ||| || |||||| || | || || | || |||
Sbjct 2441 GTCTGAGCCTCGAGGATAGCGAACCAAA----GCTTCTGAGCCTTGATGGTCTTGCGACC 2386
Query 2071743 ---GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTG 2071799
||||| | || || || | | |||| |||
Sbjct 2385 CTTGCCCTCGCTCTCGTACTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGC 2326
Query 2071800 CAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCG 2071859
|||||||| ||||| ||||| | ||| | |||||||||| | | | | || ||
Sbjct 2325 AAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTT 2266
Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919
||| || |||||| |||| ||| |||| ||||| || || || || ||||||||||
Sbjct 2265 CATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTT 2206
Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979
|||||||||||| |||||||| |||||| || |||||||||||| ||||| |||||
Sbjct 2205 GCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTA 2146
Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
| ||||||||| || ||||||| ||||||
Sbjct 2145 GATGGCAAAGGCACCGGGGCGCTTGTTGCCGCC 2113
Score = 127 bits (140), Expect = 3e-23
Identities = 186/263 (71%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596
|| ||||||||| || || || ||| | | | | ||||||||||| || | |||||
Sbjct 2115 GCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTT 2056
Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656
||| | |||||||| || || | ||| | |||| ||| || | ||||| | |
Sbjct 2055 GGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAG 1996
Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716
|| || |||||||| | ||||||||| | ||||| | || || || |||||||||||
Sbjct 1995 ACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCC 1936
Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776
|| ||||||||| |||||||| | | || ||||| || || | || | | | | ||
Sbjct 1935 ATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGT 1876
Query 2073777 GCCGGCATTGAAGAGCGTGGGCG 2073799
|| || |||||||| || ||||
Sbjct 1875 ACCAGCGTTGAAGAGGGTAGGCG 1853
Score = 93.3 bits (102), Expect = 7e-13
Identities = 127/175 (73%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 2069617 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCTC 2069675
||||| ||||||||||| ||||| | ||||| | ||| ||| | ||| | |||
Sbjct 3152 AAGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTATGGC-TCGAAGCACTC 3094
Query 2069676 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTT 2069735
| | ||| ||||||||||| |||| || || |||||| | || ||||| ||||||||
Sbjct 3093 GTTCCAGCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTT 3034
Query 2069736 GCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCCG 2069790
||||| |||| || | | | |||| || || | | ||||||||||| || ||
Sbjct 3033 GCGCACACCGTGCTCGCTGATCTGCGCACGGAGAGGGGCCCAGTCCCAGAGGTCG 2979
>seq1626
Length=18048
Score = 154 bits (170), Expect = 2e-31
Identities = 120/143 (84%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
|||||||||| | ||||| ||| | |||||||| ||||||||||||||||||||||
Sbjct 10239 AGGTCGACCAGGAGATGCTCTTCGAGATCATCCTCGCGGCCAACTACCTCGACATCAAGC 10298
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
|||||||||| | || ||||||||||| |||||| | |||||||||||| | |||||||
Sbjct 10299 CCCTCCTCGACGTTGGATGCAAGACCGTCGCCAACATGATCAAGGGCAAGACCCCCGAGG 10358
Query 2035732 ACATCCGCAAGACCTTTAACATC 2035754
| ||||||||| ||| ||||||
Sbjct 10359 AGATCCGCAAGCTCTTCAACATC 10381
>seq2930
Length=4448
Score = 122 bits (134), Expect = 1e-21
Identities = 215/311 (69%), Gaps = 12/311 (4%)
Strand=Plus/Minus
Query 429513 CAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGG 429572
||| |||| |||| ||| |||||||| || | || |||||| ||| || | |||||
Sbjct 4202 CAGTTCGGCTGGATCGTTGAGCGCCATCTCAGGACTGGCGACTACGTCCTCTTCAACCGT 4143
Query 429573 CAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCC--CATGCCCGGTC 429630
|| || |||||||||| ||| ||| | ||| ||| | | |||| |
Sbjct 4142 CAACCCTCGCTCCACAAAATGTCCATGATGTGTCACC--GTGTTCGCGTCATGAACTACT 4085
Query 429631 GCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACG 429690
||||||||| |||||||| | || ||| | |||||||||||||| ||||| ||||
Sbjct 4084 CCACCTTCCGTCTCAACCTCTCGGTCACGTCGCCATACAACGCCGACTTCGACGGAGACG 4025
Query 429691 AGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGG 429750
|||||||| ||||||| || || || ||| | | || ||||| || ||| | |
Sbjct 4024 AGATGAACTTGCACGTTCCTCAATCAGAGGAGACCCGTGCCGAGCTCAGCCAGATC---- 3969
Query 429751 GCGTGGCCCTCAAGGC----CGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTG 429806
|| ||| |||||| | | ||||| |||||||||||||| |||| || | |||
Sbjct 3968 GCATGGGTGCCAAGGCAAATCATTTCGCCCCAGGCCAACAAGCCTGTCATGGGTATTGTG 3909
Query 429807 ATGGACGCCCT 429817
|||| ||||
Sbjct 3908 CAGGACACCCT 3898
>seq1321
Length=24731
Score = 122 bits (134), Expect = 1e-21
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 793916 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 793975
||||||| |||||| ||||||| |||||||| |||||||| | ||||||||| |||
Sbjct 19512 CACGCGCGACTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAA 19453
Query 793976 CGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGAC 794035
|||||||| | |||| |||||||| | ||||||| | | || |||||||| ||
Sbjct 19452 CGGGTTGGTGGCATGGTACAGCTTCTCGTAGCCGAGCGCGACGACGAGCCGGTCGGCCAC 19393
Query 794036 GAATTCAATGTACTGGCACATG 794057
||||| |||||||||||||||
Sbjct 19392 AAATTCCATGTACTGGCACATG 19371
Score = 89.7 bits (98), Expect = 8e-12
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| |||||||| ||| | |||||| ||| ||||||| |||| || || ||||||
Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| |||||||| ||| ||||||||| ||||||||||| || ||||||
Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059
Query 794461 CCGACGAGCCGC 794472
||| || |||
Sbjct 19058 GCGATCAGACGC 19047
>seq154
Length=19388
Score = 122 bits (134), Expect = 1e-21
Identities = 146/196 (74%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534
||||||||||||||||| ||||| |||| ||||||| | | || || ||| | | |||
Sbjct 326 TTGGTGACGGCCTTGGTGCCCTCGGAGATGGCGTGCTTCGAGAGCTCACCGGGGAGGATG 267
Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG-CGC 1485593
|| || |||||||||||||||||||| | ||| || ||| | ||| || || |||
Sbjct 266 AGACGGACGGCGGTCTGGATCTCGCGCGACGAGATGGTCGAGCGGTGGTT-GTACGACGC 208
Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653
|| | ||||||||| | ||||| |||| |||||| |||| |||||||| | |||
Sbjct 207 GAGCTTGGACGCCTCGGTGGCAATGCGCTCGAAGATGTCGCTGACGAACGAGTTGAGGAT 148
Query 1485654 CGACATCGATTTGTTG 1485669
| ||| | ||||||
Sbjct 147 GGCCATGGCCTTGTTG 132
>seq2511
Length=1635
Score = 120 bits (132), Expect = 5e-21
Identities = 206/293 (70%), Gaps = 12/293 (4%)
Strand=Plus/Plus
Query 429513 CAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGG 429572
||| |||| |||| |||||||||||| || | || |||||| || || | |||||
Sbjct 1201 CAGTTCGGCTGGATCGTCGAGCGCCATCTTAGGACAGGCGACTATGTCCTCTTCAACCGT 1260
Query 429573 CAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTG-GTGCCCATGCCCGG-TC 429630
|| || || ||||||| | ||| ||| | |||| ||| ||| | ||| | ||
Sbjct 1261 CAACCCTCTCTCCACAAGATGTCCATGATGTGCCACCGCGTGCGTGTC-ATGAACTACTC 1319
Query 429631 GCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACG 429690
| || ||||| |||||||| | || ||| | |||||||||||||| ||||| ||||
Sbjct 1320 G-ACATTCCGTCTCAACCTCTCGGTCACGTCGCCATACAACGCCGACTTCGACGGAGACG 1378
Query 429691 AGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGG 429750
|||||||| |||||||||| || || ||| | | ||||| || | ||| | |
Sbjct 1379 AGATGAACTTGCACGTGCCTCAATCAGAGGAGACGCGCGCAGAGCTGAGCCAGATC---- 1434
Query 429751 GCGTGGCCCTCAAGGC----CGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 429799
|| ||| |||||| | | ||||| |||||||||||||| |||| ||
Sbjct 1435 GCATGGGTGCCAAGGCAAATCATTTCGCCTCAGGCCAACAAGCCTGTCATGGG 1487
>seq2344
Length=28079
Score = 116 bits (128), Expect = 6e-20
Identities = 134/178 (75%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| ||||| |||| ||||||| ||| || |||||| | |
Sbjct 1109 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGATGGCGTGCTTGGAAAGCTCGCCGGGAAG 1050
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590
||| || || |||||||||||||||||||| | ||| || ||| | ||| || ||
Sbjct 1049 GATGAGACGGACGGCGGTCTGGATCTCGCGCGACGAGATGGTCGAGCGGTGGTT-GTACG 991
Query 1485591 -CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
||| || | |||||||| |||| || |||| |||||| || ||||||||
Sbjct 990 ACGCGAGCTTGGAAGCCTCGGTAGCGATACGCTCGAAAATGTCGGCAACGAACGAGTT 933
Score = 91.5 bits (100), Expect = 2e-12
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663
||||||||| | ||||| |||| |||||| || || ||||| | ||| | ||| |
Sbjct 888 GCCTCGGTGGCAATGCGCTCGAAGATGTCGGCAACGAAGGAGTTGAGGATGGCCATGGCC 829
Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAG 1485723
||||||||||| || ||||||||| ||||||||||| || ||| | ||||||||
Sbjct 828 TTGTTGGAGATACCGGTGTCGGGGTGGACCTGCTTGAGGACACGGTAGATGTAGGACGAG 769
Query 1485724 TACGA 1485728
|||||
Sbjct 768 TACGA 764
>seq1684
Length=6100
Score = 104 bits (114), Expect = 4e-16
Identities = 77/90 (86%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| ||||| |||| ||||||| ||| || |||||| | |
Sbjct 141 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGATGGCGTGCTTGGAAAGCTCGCCGGGAAG 82
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560
||| || || ||||||||||||||||||||
Sbjct 81 GATGAGACGGACGGCGGTCTGGATCTCGCG 52
>seq3111
Length=26931
Score = 95.1 bits (104), Expect = 2e-13
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 2175077 GCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTG 2175136
||||||||||||||| || || ||||||| || | || || || || | || |||||
Sbjct 3346 GCCGTCGGTGCCGTTCTTGAAACCGACCGACATGGAGAGAGCGGAAGCAAGCTCACGGTG 3287
Query 2175137 CACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGC 2175178
|||||| |||||||||||||||||| | ||||||||||||
Sbjct 3286 CACCTGCGACTCGGTGGTGCGCGCGCCGATGGCGCCCCACGC 3245
>seq108
Length=36985
Score = 89.7 bits (98), Expect = 8e-12
Identities = 187/271 (69%), Gaps = 6/271 (2%)
Strand=Plus/Minus
Query 118657 CCTCGAGCACGACGCCGACGCCGCGCGCGCCCG-TGACCTCGCTGATGCTCTCGGCGATC 118715
|||| | |||||| |||||||||| | ||| | || |||| ||||| || | |
Sbjct 30468 CCTCCATGACGACGGCGACGCCGCGTG-GCCGGATGGCCTCCATGATGGCGAGCGCAACC 30410
Query 118716 TGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGG 118775
|| | |||||| |||||||||||||| || |||| | | ||| |||| ||||
Sbjct 30409 TGCCTCGTGAGGCGCTCCTGCACCTGGAGACGCCTAGAGAACGTCTCGGCGATACGCGCA 30350
Query 118776 ATCTTGCTCAGGCCGATGATCCTGCCCGC-GGGCAGGTAGCCCACGTGCGCCTTGCCGAT 118834
| |||| || |||| || | || | ||| | ||| || | | ||||||| |
Sbjct 30349 AGCTTGGAGAGACCGAGGA-CGAGCTTGTTGGGGATGTAACCAATGCTGATCTTGCCGGT 30291
Query 118835 AAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGCGCACGGTCACCAT 118894
||||| | || ||||||||||| | |||||| | || ||||||||||| | |||||
Sbjct 30290 GAAGGGGACGAGGTGGTGCTCGCAGAGGGAGAAGACATCGATGTCGCGCACAATGACCAT 30231
Query 118895 CTCGCCCGACGT-CTCGGCAAAGAGGGCGTC 118924
||| | || || |||||| || | ||| ||
Sbjct 30230 CTC-CTCGTGGTCCTCGGCGAACACGGCATC 30201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915839836427858
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