Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 282 4e-71
seq2686 136 4e-27
seq238 109 5e-19
seq180 109 5e-19
seq1908 107 2e-18
seq1321 105 6e-18
seq3769 104 2e-17
>seq2414
Length=19474
Score = 282 bits (312), Expect = 4e-71
Identities = 1126/1750 (64%), Gaps = 47/1750 (3%)
Strand=Plus/Minus
Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111
||||||||||||||| ||||||||||||||||| ||||| | || |||| |||
Sbjct 3372 CGACTGGCTCTGGTCGATGAACGCGCCACGGTCGGCGGCGAGGTCGATGACGGCCTTCTG 3313
Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171
| ||||||||| |||||||||| | |||||| | || || ||| | |||
Sbjct 3312 CGAAATCTCCCAGACCGTCTTGTAGATGGCCTTGATCTCGTCCGGGATGTTGGGAATGTT 3253
Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231
||| | ||| || |||| || | || | || ||| | ||| | | | |||
Sbjct 3252 CTGGATCGAACCACGGTTGGCGATGATGAGGTTCTTCATGTTGTCGTCCCAGATGCCGAG 3193
Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291
| |||||||||| | || | | || ||||| || || || | |||||| ||
Sbjct 3192 GTTGATCAGGTCACGCAGGAGCCATGGGCAGACAACCTGGAAGTCACCCGAGAGCACACG 3133
Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351
|| || | | || | || || || ||||||| ||| | |||||||
Sbjct 3132 GCGAGCGTAGAGCATCGAGGTGTATGGCTCGAAGCACTCGTTCCAGCCGAGGATCTGCGA 3073
Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411
||||| || || |||||| || || || ||||||||||||| |||| | | | ||
Sbjct 3072 GGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTTGCGCACACCGTGCTCGCTGAT 3013
Query 148412 TTTGCGCTTC-AGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCC-ACATGTCG 148469
| |||| |||| |||||||||||||| | || | |||| || | | ||||
Sbjct 3012 CT-GCGCACGGAGAGGGGCCCAGTCCCAGAGGTCGGTAGGAG-CACGGCCCCAGAGGTCG 2955
Query 148470 TACTGCAGAATGCCGCGGCTAGCGGGGCT-GCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528
|||| || |||| || || |||| ||||||||||||| |||| ||| || |
Sbjct 2954 AACTGGAGCTTGCCCTGGG-AGATGGGCGAGCCCTCGTACGAGGGGTACTTGCCGAGCTC 2896
Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588
| || || |||| | || |||||| ||| ||| ||| || |||||| || |
Sbjct 2895 CTTGGCAAGCTCGCTGGACGACTCGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTGAG 2836
Query 148589 GTTGAGCA---GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTC 148645
||||||| | ||| | | | | ||| | ||||| || || || || | |||
Sbjct 2835 GTTGAGCTCACGAGCCTCAGGCGAG---TCGAAGGGCATGCGGAGAGCCATGAAGGTGTC 2779
Query 148646 GGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCT 148705
||| || ||||| || || | || | ||| ||||| ||||||||| ||| ||
Sbjct 2778 GGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCCTC 2719
Query 148706 CTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT 148765
|| || || |||| |||||| ||||| || ||| || || || ||||| ||
Sbjct 2718 CTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTGGT 2659
Query 148766 AATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATG----CATCGGTTC--AC 148819
|| | ||||| | || ||||| | | | | | | | || || |
Sbjct 2658 GATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGAAG 2599
Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879
|| || ||||| || ||||| ||||| ||| || || | |||||| | ||||||
Sbjct 2598 AGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATCTC 2539
Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939
| ||| || ||| | ||||| ||| | || || || || |||| ||||
Sbjct 2538 AGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGC 2479
Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAA 148996
||||||||||| |||||| | || || ||||| || ||| | || | || |||
Sbjct 2478 GGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAA 2419
Query 148997 CCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---CCTG---CTCGTA 149050
|| | || | ||| || |||| || || | |||||||| ||| ||||||
Sbjct 2418 CCAAAGC---TTCTGAGC-----CTTGATGGTCTT-GCGACCCTTGCCCTCGCTCTCGTA 2368
Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110
|| ||| |||||||| |||| || | ||| | || |||||||||| |
Sbjct 2367 CTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGC 2308
Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170
||||||||||| | ||| |||||||||| | || |||||||| || || ||||| |
Sbjct 2307 GGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGAT 2248
Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCA 149229
|||||| ||||| | |||||| || | | ||| || || ||| ||| ||| |
Sbjct 2247 CCAGAGGGCGTAGAAGAGGTCACG-GGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGA 2189
Query 149230 GGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCT 149289
||| ||| | | ||| | ||| |||||||| ||||| | ||| | || | || ||
Sbjct 2188 GGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGG 2129
Query 149290 TGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAG 149346
|||| ||||||||||||||||||| || | || | || | || | ||| |
Sbjct 2128 GGCGCTTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGG 2069
Query 149347 GTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCA 149403
| | || || ||| ||| ||||| ||| | |||| ||| ||| || || |
Sbjct 2068 GAACGATACCGTTGG-AGTAACCGTTGGTACCGGCAATGTACGA--GCCCTTGGCACGGA 2012
Query 149404 CTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGA 149463
||||| | || || || || |||||| | ||| ||||| |||||| ||
Sbjct 2011 TGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGA 1952
Query 149464 GCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACA 149523
| || ||||||||| || || |||| |||||||| | || ||||| || |||
Sbjct 1951 GGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACA 1892
Query 149524 TTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCT 149583
| || | | | || || || ||| | ||| || ||||| || || || ||
Sbjct 1891 TCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCT 1832
Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643
||| | | || | ||||| || ||||| |||| ||||| ||||| || | ||
Sbjct 1831 CCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACGG 1772
Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703
|| ||||| ||||| |||||||| ||||| || || ||| || || ||| | ||
Sbjct 1771 ACACACGCATAAGCATGTGCTGCGGGCGCTCGGCGACCTTGCCACCGATGCGGAGGAGGT 1712
Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763
|| || || |||||| |||| ||| | ||||| ||||| ||| ||| | |
Sbjct 1711 AGGAACGCTCGAGAGTCTTGAAGCCGAAGAAGTTGTAAGAGAAGTCACGGTCGTAGATGA 1652
Query 149764 TGGCGGCGTC 149773
|||| | |||
Sbjct 1651 TGGCCGAGTC 1642
>seq2686
Length=8065
Score = 136 bits (150), Expect = 4e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 6592 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 6651
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | ||||| |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 6652 AGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 6711
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| |||| ||||| || ||||| || || ||
Sbjct 6712 GACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 6771
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 6772 CTTGACGAAGATCTGCAT 6789
>seq238
Length=11627
Score = 109 bits (120), Expect = 5e-19
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||||||||||||||||||| | || || |||||||||||||||||||| || |||||
Sbjct 11558 GTCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTT 11499
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| ||| || ||||| | || | ||||| | || ||| || || | |||||
Sbjct 11498 GTCCTGGATTTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGAT 11439
Query 133625 GGTTTTGCCGGTCAG 133639
||| |||||||| ||
Sbjct 11438 GGTCTTGCCGGTGAG 11424
>seq180
Length=11059
Score = 109 bits (120), Expect = 5e-19
Identities = 132/177 (75%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| || | |||| ||| ||||||||||||||| ||
Sbjct 10755 GTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACC-GTCCTCGAGCTGCTTTCC 10813
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| | ||||| ||||||||||||||||| || || |||||||| |||||| |||
Sbjct 10814 CGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTT 10873
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639
|| | || | ||||| | | ||| || |||| |||| || |||||||| ||
Sbjct 10874 GACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAG 10930
>seq1908
Length=40588
Score = 107 bits (118), Expect = 2e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 116466 CGGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGC 116525
|| || || |||||||||| | ||| |||| || ||| | |||||||||||||| ||
Sbjct 7770 CGCCCAGCGCGGCTTCCACATCCACCAGTTCGGTGACCTCTCGAACGGCTGCACCTCGGC 7829
Query 116526 CGGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCA 116585
||||| |||||||||||| |||| || | ||||| || |||| || | | | || ||
Sbjct 7830 CGGCGCCCACTTCAACCCCCACGGCAAGAAGCACGGTGCCCCCACCGACTCTGAGCGCCA 7889
Query 116586 CGTCGGTGACCTGGGCAAC 116604
| |||||||||| ||||||
Sbjct 7890 CATCGGTGACCTCGGCAAC 7908
>seq1321
Length=24731
Score = 105 bits (116), Expect = 6e-18
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| || ||||| ||||||| ||||||||||||||| || ||||||||| || ||
Sbjct 19202 AGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTG 19143
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759
|||||| |||| | || | |||||| |||| ||||| || || |||||| |||
Sbjct 19142 AGGCCGCGCATCAGACCACGCTTCTTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAG 19083
Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCA 120790
|| | |||||| || |||||||||| ||
Sbjct 19082 AAGATGCCCTCAACACACGCAAAGGCGATCA 19052
>seq3769
Length=13229
Score = 104 bits (114), Expect = 2e-17
Identities = 116/152 (76%), Gaps = 5/152 (3%)
Strand=Plus/Minus
Query 116466 CGGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCA---ACGGCTGCACCTC 116522
|||| ||||||||||||||| |||| || ||||||| | || |||||||||||||
Sbjct 10118 CGGCAAGCACGGCTTCCACGTCCACGCCTTCGGCGACATCTTCACCGACGGCTGCACCTC 10059
Query 116523 CGCCGGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCG-TTC 116581
| |||||| |||| ||||||| | || || |||| |||||| | || || | |
Sbjct 10058 CACCGGCGGGCACTACAACCCCTTCAACCGCGAGCACGCCGCGCCGACCG-AGCGGAACC 10000
Query 116582 GTCACGTCGGTGACCTGGGCAACATTGAGGCC 116613
| |||||||| ||||| |||||||| ||||||
Sbjct 9999 GCCACGTCGGCGACCTCGGCAACATCGAGGCC 9968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483397704571280
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