Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2414 282 4e-71 seq2686 136 4e-27 seq238 109 5e-19 seq180 109 5e-19 seq1908 107 2e-18 seq1321 105 6e-18 seq3769 104 2e-17 >seq2414 Length=19474 Score = 282 bits (312), Expect = 4e-71 Identities = 1126/1750 (64%), Gaps = 47/1750 (3%) Strand=Plus/Minus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 ||||||||||||||| ||||||||||||||||| ||||| | || |||| ||| Sbjct 3372 CGACTGGCTCTGGTCGATGAACGCGCCACGGTCGGCGGCGAGGTCGATGACGGCCTTCTG 3313 Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171 | ||||||||| |||||||||| | |||||| | || || ||| | ||| Sbjct 3312 CGAAATCTCCCAGACCGTCTTGTAGATGGCCTTGATCTCGTCCGGGATGTTGGGAATGTT 3253 Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 ||| | ||| || |||| || | || | || ||| | ||| | | | ||| Sbjct 3252 CTGGATCGAACCACGGTTGGCGATGATGAGGTTCTTCATGTTGTCGTCCCAGATGCCGAG 3193 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 | |||||||||| | || | | || ||||| || || || | |||||| || Sbjct 3192 GTTGATCAGGTCACGCAGGAGCCATGGGCAGACAACCTGGAAGTCACCCGAGAGCACACG 3133 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || || | | || | || || || ||||||| ||| | ||||||| Sbjct 3132 GCGAGCGTAGAGCATCGAGGTGTATGGCTCGAAGCACTCGTTCCAGCCGAGGATCTGCGA 3073 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 ||||| || || |||||| || || || ||||||||||||| |||| | | | || Sbjct 3072 GGTCGAAGCAGTAGGCATGGGGGCAACGAGAAGCGAGTTGCGCACACCGTGCTCGCTGAT 3013 Query 148412 TTTGCGCTTC-AGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCC-ACATGTCG 148469 | |||| |||| |||||||||||||| | || | |||| || | | |||| Sbjct 3012 CT-GCGCACGGAGAGGGGCCCAGTCCCAGAGGTCGGTAGGAG-CACGGCCCCAGAGGTCG 2955 Query 148470 TACTGCAGAATGCCGCGGCTAGCGGGGCT-GCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 |||| || |||| || || |||| ||||||||||||| |||| ||| || | Sbjct 2954 AACTGGAGCTTGCCCTGGG-AGATGGGCGAGCCCTCGTACGAGGGGTACTTGCCGAGCTC 2896 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | || || |||| | || |||||| ||| ||| ||| || |||||| || | Sbjct 2895 CTTGGCAAGCTCGCTGGACGACTCGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTGAG 2836 Query 148589 GTTGAGCA---GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTC 148645 ||||||| | ||| | | | | ||| | ||||| || || || || | ||| Sbjct 2835 GTTGAGCTCACGAGCCTCAGGCGAG---TCGAAGGGCATGCGGAGAGCCATGAAGGTGTC 2779 Query 148646 GGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCT 148705 ||| || ||||| || || | || | ||| ||||| ||||||||| ||| || Sbjct 2778 GGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCCTC 2719 Query 148706 CTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT 148765 || || || |||| |||||| ||||| || ||| || || || ||||| || Sbjct 2718 CTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTGGT 2659 Query 148766 AATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATG----CATCGGTTC--AC 148819 || | ||||| | || ||||| | | | | | | | || || | Sbjct 2658 GATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGAAG 2599 Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 || || ||||| || ||||| ||||| ||| || || | |||||| | |||||| Sbjct 2598 AGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATCTC 2539 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 | ||| || ||| | ||||| ||| | || || || || |||| |||| Sbjct 2538 AGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGC 2479 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAA 148996 ||||||||||| |||||| | || || ||||| || ||| | || | || ||| Sbjct 2478 GGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAA 2419 Query 148997 CCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---CCTG---CTCGTA 149050 || | || | ||| || |||| || || | |||||||| ||| |||||| Sbjct 2418 CCAAAGC---TTCTGAGC-----CTTGATGGTCTT-GCGACCCTTGCCCTCGCTCTCGTA 2368 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 || ||| |||||||| |||| || | ||| | || |||||||||| | Sbjct 2367 CTTCTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGC 2308 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 ||||||||||| | ||| |||||||||| | || |||||||| || || ||||| | Sbjct 2307 GGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGAT 2248 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCA 149229 |||||| ||||| | |||||| || | | ||| || || ||| ||| ||| | Sbjct 2247 CCAGAGGGCGTAGAAGAGGTCACG-GGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGA 2189 Query 149230 GGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCT 149289 ||| ||| | | ||| | ||| |||||||| ||||| | ||| | || | || || Sbjct 2188 GGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGG 2129 Query 149290 TGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAG 149346 |||| ||||||||||||||||||| || | || | || | || | ||| | Sbjct 2128 GGCGCTTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGG 2069 Query 149347 GTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCA 149403 | | || || ||| ||| ||||| ||| | |||| ||| ||| || || | Sbjct 2068 GAACGATACCGTTGG-AGTAACCGTTGGTACCGGCAATGTACGA--GCCCTTGGCACGGA 2012 Query 149404 CTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGA 149463 ||||| | || || || || |||||| | ||| ||||| |||||| || Sbjct 2011 TGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGA 1952 Query 149464 GCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACA 149523 | || ||||||||| || || |||| |||||||| | || ||||| || ||| Sbjct 1951 GGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACA 1892 Query 149524 TTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCT 149583 | || | | | || || || ||| | ||| || ||||| || || || || Sbjct 1891 TCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCT 1832 Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 ||| | | || | ||||| || ||||| |||| ||||| ||||| || | || Sbjct 1831 CCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACGG 1772 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703 || ||||| ||||| |||||||| ||||| || || ||| || || ||| | || Sbjct 1771 ACACACGCATAAGCATGTGCTGCGGGCGCTCGGCGACCTTGCCACCGATGCGGAGGAGGT 1712 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763 || || || |||||| |||| ||| | ||||| ||||| ||| ||| | | Sbjct 1711 AGGAACGCTCGAGAGTCTTGAAGCCGAAGAAGTTGTAAGAGAAGTCACGGTCGTAGATGA 1652 Query 149764 TGGCGGCGTC 149773 |||| | ||| Sbjct 1651 TGGCCGAGTC 1642 >seq2686 Length=8065 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 6592 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 6651 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 6652 AGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 6711 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| |||| ||||| || ||||| || || || Sbjct 6712 GACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 6771 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 6772 CTTGACGAAGATCTGCAT 6789 >seq238 Length=11627 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||||||| | || || |||||||||||||||||||| || ||||| Sbjct 11558 GTCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTT 11499 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||| | || | ||||| | || ||| || || | ||||| Sbjct 11498 GTCCTGGATTTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGAT 11439 Query 133625 GGTTTTGCCGGTCAG 133639 ||| |||||||| || Sbjct 11438 GGTCTTGCCGGTGAG 11424 >seq180 Length=11059 Score = 109 bits (120), Expect = 5e-19 Identities = 132/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | |||| ||| ||||||||||||||| || Sbjct 10755 GTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACC-GTCCTCGAGCTGCTTTCC 10813 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | ||||| ||||||||||||||||| || || |||||||| |||||| ||| Sbjct 10814 CGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTT 10873 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | || | ||||| | | ||| || |||| |||| || |||||||| || Sbjct 10874 GACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAG 10930 >seq1908 Length=40588 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 116466 CGGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGC 116525 || || || |||||||||| | ||| |||| || ||| | |||||||||||||| || Sbjct 7770 CGCCCAGCGCGGCTTCCACATCCACCAGTTCGGTGACCTCTCGAACGGCTGCACCTCGGC 7829 Query 116526 CGGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCA 116585 ||||| |||||||||||| |||| || | ||||| || |||| || | | | || || Sbjct 7830 CGGCGCCCACTTCAACCCCCACGGCAAGAAGCACGGTGCCCCCACCGACTCTGAGCGCCA 7889 Query 116586 CGTCGGTGACCTGGGCAAC 116604 | |||||||||| |||||| Sbjct 7890 CATCGGTGACCTCGGCAAC 7908 >seq1321 Length=24731 Score = 105 bits (116), Expect = 6e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| || ||||| ||||||| ||||||||||||||| || ||||||||| || || Sbjct 19202 AGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTG 19143 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 |||||| |||| | || | |||||| |||| ||||| || || |||||| ||| Sbjct 19142 AGGCCGCGCATCAGACCACGCTTCTTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAG 19083 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCA 120790 || | |||||| || |||||||||| || Sbjct 19082 AAGATGCCCTCAACACACGCAAAGGCGATCA 19052 >seq3769 Length=13229 Score = 104 bits (114), Expect = 2e-17 Identities = 116/152 (76%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 116466 CGGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCA---ACGGCTGCACCTC 116522 |||| ||||||||||||||| |||| || ||||||| | || ||||||||||||| Sbjct 10118 CGGCAAGCACGGCTTCCACGTCCACGCCTTCGGCGACATCTTCACCGACGGCTGCACCTC 10059 Query 116523 CGCCGGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCG-TTC 116581 | |||||| |||| ||||||| | || || |||| |||||| | || || | | Sbjct 10058 CACCGGCGGGCACTACAACCCCTTCAACCGCGAGCACGCCGCGCCGACCG-AGCGGAACC 10000 Query 116582 GTCACGTCGGTGACCTGGGCAACATTGAGGCC 116613 | |||||||| ||||| |||||||| |||||| Sbjct 9999 GCCACGTCGGCGACCTCGGCAACATCGAGGCC 9968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483397704571280