Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2414 147 3e-29 seq154 123 4e-22 seq1321 122 1e-21 seq2344 95.1 2e-13 seq1684 86.0 9e-11 >seq2414 Length=19474 Score = 147 bits (162), Expect = 3e-29 Identities = 210/294 (71%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||||| ||| | |||||| || |||| || ||||| || || || || || | Sbjct 1824 CATGTCGGAGCGCTACTTCACCCACGCTTCGCCTACCCTCTTCAACGCTGGTACTCCTCA 1883 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 | | |||| || || ||||| || | | |||||||| ||| ||||| || |||||||| Sbjct 1884 CGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACGACTCGATTGATGGCATCTA 1943 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 ||||| |||||| ||||| | ||||||||| | |||||||| || ||| | || | Sbjct 1944 CGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGGCGGTATTGGTCT--CCAC 2001 Query 260074 A--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | ||||| | || ||| |||| | ||| | || || |||||||| | |||||||| Sbjct 2002 ATCCACAACATCCGTGCCAAGGGCTCGTACATTGCCGGTACCAACGGTTACTCCAACGGT 2061 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | || |||||||| || | | | | ||| || || |||||||||||| || Sbjct 2062 ATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTACGTCGACCAGGGC 2115 Score = 111 bits (122), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 |||||| ||||||| || ||||||||| |||||| || || |||||||||||| || Sbjct 2113 GGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTC 2172 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || ||| || |||||| ||||||||||||| ||| ||||| | | || || Sbjct 2173 TTCGACTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGA--TGCGTGCCCGT 2226 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || ||||| |||| ||| |||| |||||| || ||| || | | | | | | || Sbjct 2227 GACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCGGACGGC 2286 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCT 262005 |||||| | ||| | ||||| ||||| |||||||| Sbjct 2287 GACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCT 2324 Score = 87.8 bits (96), Expect = 3e-11 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 262872 CGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTC 262931 || || ||||||||||| | | || || ||| | | | |||| || |||||||||| Sbjct 2979 CGACCTCTGGGACTGGGCCCCTCTCCGTGCGCAGATCAGCGAGCACGGTGTGCGCAACTC 3038 Query 262932 GTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGC 262991 | | ||||| || | |||||| || || |||| ||||||||||| ||| | |||| Sbjct 3039 GCTTCTCGTTGCCCCCATGCCTACTGCTTCGACCTCGCAGATCCTCGGCTGGAACGAGTG 3098 Query 262992 GTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 ||||| | ||| ||| | ||||| | ||||| ||||||||||| ||||| Sbjct 3099 CTTCGA-GCCATACACCTCGATGCTCTACGCTCGCCGTGTGCTCTCGGGTGACTT 3152 >seq154 Length=19388 Score = 123 bits (136), Expect = 4e-22 Identities = 143/191 (75%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 724954 CATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCA 725013 ||||| ||||||| ||||| | ||| | |||||||| |||| |||||| |||| |||| Sbjct 125 CATCCAGCAACAAGGCCATGGCCATCCTCAACTCGTTCGTCAGCGACATCTTCGAGCGCA 184 Query 725014 TCGGCACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCG 725071 | | ||||||||| ||| || ||| | |||| | ||| || ||| |||| Sbjct 185 TTGCCACCGAGGC--GTCCAAGCTCGCGTCGTACAACCACCGCTCGACCATCTCGTCGCG 242 Query 725072 CGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131 |||||||||||||||||| || || ||| | | ||| || || | | ||||||| |||| Sbjct 243 CGAGATCCAGACCGCCGTCCGTCTCATCCTCCCCGGTGAGCTCTCGAAGCACGCCATCTC 302 Query 725132 CGAGGGCACCA 725142 ||||||||||| Sbjct 303 CGAGGGCACCA 313 >seq1321 Length=24731 Score = 122 bits (134), Expect = 1e-21 Identities = 115/144 (80%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 1456607 CATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAG 1456666 ||||||||||||||| |||||| || |||||||| || ||| |||||||||| || || Sbjct 19371 CATGTGCCAGTACATGGAATTT-GTGGCCGACCGGCTCGTCGTCGCGCTCGGCTACG-AG 19428 Query 1456667 AAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAG 1456726 |||| |||| | ||||||||||| ||||||||| | |||||||| |||||||| Sbjct 19429 AAGCTGTACCATGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAG 19488 Query 1456727 ACCAACTTTTTCGAGCGCCGCGTG 1456750 ||||||| |||||| |||||| Sbjct 19489 GCCAACTTCTTCGAGTCGCGCGTG 19512 Score = 87.8 bits (96), Expect = 3e-11 Identities = 136/191 (71%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 1456121 GGAAAAAGGCCGACTGGGCGATGAAGTGGATCA-ACAAGGAGGGCCTCGACACTTTGCCG 1456179 |||| ||||||||||||||| | |||| |||| || || ||| ||| | Sbjct 18992 GGAAGAAGGCCGACTGGGCGCTCAAGTACATCACACCAGATATGCC------CTTCCGCA 19045 Query 1456180 AGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCA 1456238 ||| || ||| |||||| | || ||||||||||| ||||||||| ||| |||| Sbjct 19046 CGCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCA 19105 Query 1456239 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATC 1456298 |||| |||||||||||||| || || |||| ||| | || ||| |||||| | ||| Sbjct 19106 TCTTCTGGCTCAAGAAGCGTGGTCTGATGCGCGG-CCTCACCTTCTCCAACGAGCTCATC 19164 Query 1456299 AGTCGCGACGA 1456309 |||||||| Sbjct 19165 TCGCGCGACGA 19175 >seq2344 Length=28079 Score = 95.1 bits (104), Expect = 2e-13 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 724983 AACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGC 725042 |||||||| || |||||| |||| || |||| |||||||| || ||| Sbjct 933 AACTCGTTCGTTGCCGACATTTTCGAGCGTATCGCTACCGAGGCTTCCAAGCTCGCGTCG 992 Query 725043 TCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATG 725102 | |||| | ||| || ||| |||||||||||||||||||||| || || ||| | Sbjct 993 TACAACCACCGCTCGACCATCTCGTCGCGCGAGATCCAGACCGCCGTCCGTCTCATCCTT 1052 Query 725103 CGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | |||||| || ||| ||||||| ||||||||||||||| Sbjct 1053 CCCGGCGAGCTTTCCAAGCACGCCATCTCCGAGGGCACCA 1092 Score = 89.7 bits (98), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||||||| |||||| || ||||||||||| |||||| |||| | | Sbjct 764 TCGTACTCGTCCTACATCTACCGTGTCCTCAAGCAGGTCCACCCCGACACCGGT-----A 818 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 | |||||||||| ||||| | ||| | ||||| || || |||||| |||| ||||| Sbjct 819 T-CTCCAACAAGGCCATGGCCATCCTCAACTCCTTCGTTGCCGACATCTTCGAGCGCATT 877 Query 725016 GGCACCGAGGC 725026 | ||||||||| Sbjct 878 GCCACCGAGGC 888 >seq1684 Length=6100 Score = 86.0 bits (94), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127 |||||||||||||||||||||| || || ||| | | |||||| || ||| ||||||| Sbjct 50 CGCGCGAGATCCAGACCGCCGTCCGTCTCATCCTTCCCGGCGAGCTTTCCAAGCACGCCA 109 Query 725128 TCTCCGAGGGCACCA 725142 ||||||||||||||| Sbjct 110 TCTCCGAGGGCACCA 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177442561075164