Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 147 3e-29
seq154 123 4e-22
seq1321 122 1e-21
seq2344 95.1 2e-13
seq1684 86.0 9e-11
>seq2414
Length=19474
Score = 147 bits (162), Expect = 3e-29
Identities = 210/294 (71%), Gaps = 4/294 (1%)
Strand=Plus/Plus
Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953
||||||| ||| | |||||| || |||| || ||||| || || || || || |
Sbjct 1824 CATGTCGGAGCGCTACTTCACCCACGCTTCGCCTACCCTCTTCAACGCTGGTACTCCTCA 1883
Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013
| | |||| || || ||||| || | | |||||||| ||| ||||| || ||||||||
Sbjct 1884 CGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACGACTCGATTGATGGCATCTA 1943
Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073
||||| |||||| ||||| | ||||||||| | |||||||| || ||| | || |
Sbjct 1944 CGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGGCGGTATTGGTCT--CCAC 2001
Query 260074 A--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131
| ||||| | || ||| |||| | ||| | || || |||||||| | ||||||||
Sbjct 2002 ATCCACAACATCCGTGCCAAGGGCTCGTACATTGCCGGTACCAACGGTTACTCCAACGGT 2061
Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185
| || |||||||| || | | | | ||| || || |||||||||||| ||
Sbjct 2062 ATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTACGTCGACCAGGGC 2115
Score = 111 bits (122), Expect = 2e-18
Identities = 156/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|||||| ||||||| || ||||||||| |||||| || || |||||||||||| ||
Sbjct 2113 GGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTC 2172
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| ||| || |||||| ||||||||||||| ||| ||||| | | || ||
Sbjct 2173 TTCGACTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGA--TGCGTGCCCGT 2226
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
|| ||||| |||| ||| |||| |||||| || ||| || | | | | | | ||
Sbjct 2227 GACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCGGACGGC 2286
Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCT 262005
|||||| | ||| | ||||| ||||| ||||||||
Sbjct 2287 GACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCT 2324
Score = 87.8 bits (96), Expect = 3e-11
Identities = 126/175 (72%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 262872 CGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTC 262931
|| || ||||||||||| | | || || ||| | | | |||| || ||||||||||
Sbjct 2979 CGACCTCTGGGACTGGGCCCCTCTCCGTGCGCAGATCAGCGAGCACGGTGTGCGCAACTC 3038
Query 262932 GTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGC 262991
| | ||||| || | |||||| || || |||| ||||||||||| ||| | ||||
Sbjct 3039 GCTTCTCGTTGCCCCCATGCCTACTGCTTCGACCTCGCAGATCCTCGGCTGGAACGAGTG 3098
Query 262992 GTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045
||||| | ||| ||| | ||||| | ||||| ||||||||||| |||||
Sbjct 3099 CTTCGA-GCCATACACCTCGATGCTCTACGCTCGCCGTGTGCTCTCGGGTGACTT 3152
>seq154
Length=19388
Score = 123 bits (136), Expect = 4e-22
Identities = 143/191 (75%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 724954 CATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCA 725013
||||| ||||||| ||||| | ||| | |||||||| |||| |||||| |||| ||||
Sbjct 125 CATCCAGCAACAAGGCCATGGCCATCCTCAACTCGTTCGTCAGCGACATCTTCGAGCGCA 184
Query 725014 TCGGCACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCG 725071
| | ||||||||| ||| || ||| | |||| | ||| || ||| ||||
Sbjct 185 TTGCCACCGAGGC--GTCCAAGCTCGCGTCGTACAACCACCGCTCGACCATCTCGTCGCG 242
Query 725072 CGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131
|||||||||||||||||| || || ||| | | ||| || || | | ||||||| ||||
Sbjct 243 CGAGATCCAGACCGCCGTCCGTCTCATCCTCCCCGGTGAGCTCTCGAAGCACGCCATCTC 302
Query 725132 CGAGGGCACCA 725142
|||||||||||
Sbjct 303 CGAGGGCACCA 313
>seq1321
Length=24731
Score = 122 bits (134), Expect = 1e-21
Identities = 115/144 (80%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 1456607 CATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAG 1456666
||||||||||||||| |||||| || |||||||| || ||| |||||||||| || ||
Sbjct 19371 CATGTGCCAGTACATGGAATTT-GTGGCCGACCGGCTCGTCGTCGCGCTCGGCTACG-AG 19428
Query 1456667 AAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAG 1456726
|||| |||| | ||||||||||| ||||||||| | |||||||| ||||||||
Sbjct 19429 AAGCTGTACCATGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAG 19488
Query 1456727 ACCAACTTTTTCGAGCGCCGCGTG 1456750
||||||| |||||| ||||||
Sbjct 19489 GCCAACTTCTTCGAGTCGCGCGTG 19512
Score = 87.8 bits (96), Expect = 3e-11
Identities = 136/191 (71%), Gaps = 9/191 (5%)
Strand=Plus/Plus
Query 1456121 GGAAAAAGGCCGACTGGGCGATGAAGTGGATCA-ACAAGGAGGGCCTCGACACTTTGCCG 1456179
|||| ||||||||||||||| | |||| |||| || || ||| ||| |
Sbjct 18992 GGAAGAAGGCCGACTGGGCGCTCAAGTACATCACACCAGATATGCC------CTTCCGCA 19045
Query 1456180 AGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCA 1456238
||| || ||| |||||| | || ||||||||||| ||||||||| ||| ||||
Sbjct 19046 CGCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCA 19105
Query 1456239 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATC 1456298
|||| |||||||||||||| || || |||| ||| | || ||| |||||| | |||
Sbjct 19106 TCTTCTGGCTCAAGAAGCGTGGTCTGATGCGCGG-CCTCACCTTCTCCAACGAGCTCATC 19164
Query 1456299 AGTCGCGACGA 1456309
||||||||
Sbjct 19165 TCGCGCGACGA 19175
>seq2344
Length=28079
Score = 95.1 bits (104), Expect = 2e-13
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 724983 AACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGC 725042
|||||||| || |||||| |||| || |||| |||||||| || |||
Sbjct 933 AACTCGTTCGTTGCCGACATTTTCGAGCGTATCGCTACCGAGGCTTCCAAGCTCGCGTCG 992
Query 725043 TCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATG 725102
| |||| | ||| || ||| |||||||||||||||||||||| || || ||| |
Sbjct 993 TACAACCACCGCTCGACCATCTCGTCGCGCGAGATCCAGACCGCCGTCCGTCTCATCCTT 1052
Query 725103 CGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| |||||| || ||| ||||||| |||||||||||||||
Sbjct 1053 CCCGGCGAGCTTTCCAAGCACGCCATCTCCGAGGGCACCA 1092
Score = 89.7 bits (98), Expect = 7e-12
Identities = 99/131 (76%), Gaps = 6/131 (5%)
Strand=Plus/Plus
Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955
||||||||||||| |||||| || ||||||||||| |||||| |||| | |
Sbjct 764 TCGTACTCGTCCTACATCTACCGTGTCCTCAAGCAGGTCCACCCCGACACCGGT-----A 818
Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015
| |||||||||| ||||| | ||| | ||||| || || |||||| |||| |||||
Sbjct 819 T-CTCCAACAAGGCCATGGCCATCCTCAACTCCTTCGTTGCCGACATCTTCGAGCGCATT 877
Query 725016 GGCACCGAGGC 725026
| |||||||||
Sbjct 878 GCCACCGAGGC 888
>seq1684
Length=6100
Score = 86.0 bits (94), Expect = 9e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127
|||||||||||||||||||||| || || ||| | | |||||| || ||| |||||||
Sbjct 50 CGCGCGAGATCCAGACCGCCGTCCGTCTCATCCTTCCCGGCGAGCTTTCCAAGCACGCCA 109
Query 725128 TCTCCGAGGGCACCA 725142
|||||||||||||||
Sbjct 110 TCTCCGAGGGCACCA 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177442561075164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |