Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 102 7e-17
seq3434 91.5 1e-13
seq180 91.5 1e-13
>seq2686
Length=8065
Score = 102 bits (112), Expect = 7e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | ||| || |||| || |||||||| || || ||
Sbjct 6598 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 6657
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | || |||||||||| |||||| ||| | ||
Sbjct 6658 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 6716
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| ||| |||||||| | ||||| || || ||||| | || || |
Sbjct 6717 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 6776
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 6777 CGAAGATCTGCAT 6789
>seq3434
Length=7857
Score = 91.5 bits (100), Expect = 1e-13
Identities = 132/185 (71%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 41170 ATGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCC 41229
||||||| ||||||||| |||||||||| ||| || ||||| ||| ||||||||
Sbjct 7148 ATGTGGACCTTCTCGAGGATGAGCTGCGCGATACGGTCGCCCTTAGCCACGGCAAAGTCC 7207
Query 41230 ACGTCG---TTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATG 41286
|||| | |||| || | ||| || || | ||| |||||||| ||||||
Sbjct 7208 GAGTCGCCATAGTTGAACAGGAGCACCTTG---ACTTCGCCGCGGTAGTCGGCGTCGATG 7264
Query 41287 ACGCCAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTA 41346
||||| || | |||||||| ||||||| ||| || ||||| || || ||||| |
Sbjct 7265 ACGCCGGCGCCCGTGTCGATCGAGTGCTTCGCCGCGAGACCCGAGCGAGGAGCGATACGC 7324
Query 41347 CCGTA 41351
|||||
Sbjct 7325 CCGTA 7329
>seq180
Length=11059
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||| || | |||| |||||| || |||||||| || |
Sbjct 10725 CCACCACGAAGACGGAGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAA 10784
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || |||| || |||||||| ||||| || || | ||||||||||| | ||||
Sbjct 10785 AGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGA 10844
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| | |||||||||| |||||| ||| | |||| | | ||||| ||| || ||
Sbjct 10845 ATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCGATGGTGTCCGACGACTCGAC 10903
Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712
||| | |||||||| || || ||
Sbjct 10904 CTCGAGAGTGATCGTCTTGCCGGT 10927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450772063335760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |