Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2686 102 7e-17 seq3434 91.5 1e-13 seq180 91.5 1e-13 >seq2686 Length=8065 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || || || Sbjct 6598 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 6657 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 6658 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 6716 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| ||| |||||||| | ||||| || || ||||| | || || | Sbjct 6717 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 6776 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 6777 CGAAGATCTGCAT 6789 >seq3434 Length=7857 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 41170 ATGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCC 41229 ||||||| ||||||||| |||||||||| ||| || ||||| ||| |||||||| Sbjct 7148 ATGTGGACCTTCTCGAGGATGAGCTGCGCGATACGGTCGCCCTTAGCCACGGCAAAGTCC 7207 Query 41230 ACGTCG---TTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATG 41286 |||| | |||| || | ||| || || | ||| |||||||| |||||| Sbjct 7208 GAGTCGCCATAGTTGAACAGGAGCACCTTG---ACTTCGCCGCGGTAGTCGGCGTCGATG 7264 Query 41287 ACGCCAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTA 41346 ||||| || | |||||||| ||||||| ||| || ||||| || || ||||| | Sbjct 7265 ACGCCGGCGCCCGTGTCGATCGAGTGCTTCGCCGCGAGACCCGAGCGAGGAGCGATACGC 7324 Query 41347 CCGTA 41351 ||||| Sbjct 7325 CCGTA 7329 >seq180 Length=11059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||| || | |||| |||||| || |||||||| || | Sbjct 10725 CCACCACGAAGACGGAGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAA 10784 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| ||||| || || | ||||||||||| | |||| Sbjct 10785 AGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGA 10844 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| |||||| ||| | |||| | | ||||| ||| || || Sbjct 10845 ATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCGATGGTGTCCGACGACTCGAC 10903 Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712 ||| | |||||||| || || || Sbjct 10904 CTCGAGAGTGATCGTCTTGCCGGT 10927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450772063335760