Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2414 178 2e-39 seq400 98.7 1e-15 seq1321 86.0 8e-12 >seq2414 Length=19474 Score = 178 bits (196), Expect = 2e-39 Identities = 673/1047 (64%), Gaps = 27/1047 (3%) Strand=Plus/Minus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || |||||||| |||||||| | ||| | || | ||| ||||| || || || || || Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721 Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 || ||||| || | || | ||||| ||| || || ||||| || | ||| Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661 Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232 ||||| || || || || | | || |||| ||| ||| | |||| | ||| Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 || || || || || | ||||| || || ||| || | |||||| | || Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATC 2541 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || | |||||| ||| || || || | | || ||||| ||| |||| Sbjct 2540 TCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTG 2481 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || ||||||||||||||| |||| || ||||| ||||| | | ||| ||||| Sbjct 2480 GCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCG 2421 Query 111413 TTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTACTT 111468 ||||| | || | | || | |||| ||| ||| | || ||| ||||||||| Sbjct 2420 AACCAAAGCTTCTGAGCCTTG----ATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTT 2365 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCT 111526 ||| || || |||||||| | | | |||||| || || || || | | Sbjct 2364 CTCGTAAAGCTGCTCGAACTCCTC--CGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCG 2307 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || || | || | ||| | || | |||| || ||||||||||| ||||| || ||| Sbjct 2306 GGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATC 2247 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 || |||| | ||||| || | || ||| || | || ||||| || | Sbjct 2246 CAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2187 Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---- 111702 || ||||| || | || || |||||||| ||||| || |||| || | | || Sbjct 2186 TCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGG 2127 Query 111703 --CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 ||| | | ||||| | | || | || || || ||||| | | | || ||||| Sbjct 2126 CGCTTGTTGCCGCCCTGGTCGA----CGTAACGAGCAGTGGCATCGTACGCACGGAGCAT 2071 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTC 111817 |||| ||||| | || | ||| || || || ||| ||||| | |||| | Sbjct 2070 GGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCACGG 2013 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | |||||||| | |||||||| || || ||| ||||| || || || | | Sbjct 2012 ATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTG 1953 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | ||||| || | || ||||| ||||| |||||| |||||||||| ||| Sbjct 1952 AGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGAC 1893 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 ||||| | || |||||||| ||||||||||| || | ||||| |||| | Sbjct 1892 ATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGC 1833 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | ||||| || || ||||| | |||| || |||| || |||||||| |||| Sbjct 1832 TCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACG 1773 Query 112058 GCGACCCGCATGAACATGTACTGTGGG 112084 | || ||||| | ||||| ||| ||| Sbjct 1772 GACACACGCATAAGCATGTGCTGCGGG 1746 >seq400 Length=29784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 11682 CAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGG 11741 |||||||||| || || | || ||| ||||| ||||||||||| || || | | Sbjct 15557 CAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGGAAC 15616 Query 11742 CAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 | ||| || | || ||| ||||| || | ||||| || |||| ||| ||||||||| Sbjct 15617 CGGAG-ACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGGTC 15675 Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA--CTTC 11858 || || ||||| || ||||| || | |||||| || || |||||||||||| |||| Sbjct 15676 TTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCAAGCTTC 15735 Query 11859 -CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCC 11917 | | | || || | |||||| || | |||| ||| || || || |||||| Sbjct 15736 TCGTACTTGGTC---GGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTTGGCC 15792 Query 11918 GCGTCAATCCCCTCAACATCACTGAAGCGG 11947 |||| || || | || || | ||||||| Sbjct 15793 TCGTCCATGCCAGCTACGTCGCGGAAGCGG 15822 >seq1321 Length=24731 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| || || || || || || || |||||| || || |||| ||||| |||||| Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || || |||||| || ||||||||||| ||||| ||||||||||| Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059 Query 122797 GC 122798 || Sbjct 19058 GC 19057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628001995771200