Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 178 2e-39
seq400 98.7 1e-15
seq1321 86.0 8e-12
>seq2414
Length=19474
Score = 178 bits (196), Expect = 2e-39
Identities = 673/1047 (64%), Gaps = 27/1047 (3%)
Strand=Plus/Minus
Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112
|| |||||||| |||||||| | ||| | || | ||| ||||| || || || || ||
Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721
Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172
|| ||||| || | || | ||||| ||| || || ||||| || | |||
Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661
Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232
||||| || || || || | | || |||| ||| ||| | |||| | |||
Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601
Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292
|| || || || || | ||||| || || ||| || | |||||| | ||
Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATC 2541
Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352
|| || || | |||||| ||| || || || | | || ||||| ||| ||||
Sbjct 2540 TCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTG 2481
Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412
|| ||||||||||||||| |||| || ||||| ||||| | | ||| |||||
Sbjct 2480 GCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCG 2421
Query 111413 TTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTACTT 111468
||||| | || | | || | |||| ||| ||| | || ||| |||||||||
Sbjct 2420 AACCAAAGCTTCTGAGCCTTG----ATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTT 2365
Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCT 111526
||| || || |||||||| | | | |||||| || || || || | |
Sbjct 2364 CTCGTAAAGCTGCTCGAACTCCTC--CGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCG 2307
Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586
|| || | || | ||| | || | |||| || ||||||||||| ||||| || |||
Sbjct 2306 GGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATC 2247
Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646
|| |||| | ||||| || | || ||| || | || ||||| || |
Sbjct 2246 CAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2187
Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---- 111702
|| ||||| || | || || |||||||| ||||| || |||| || | | ||
Sbjct 2186 TCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGG 2127
Query 111703 --CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759
||| | | ||||| | | || | || || || ||||| | | | || |||||
Sbjct 2126 CGCTTGTTGCCGCCCTGGTCGA----CGTAACGAGCAGTGGCATCGTACGCACGGAGCAT 2071
Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTC 111817
|||| ||||| | || | ||| || || || ||| ||||| | |||| |
Sbjct 2070 GGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCACGG 2013
Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877
| | |||||||| | |||||||| || || ||| ||||| || || || | |
Sbjct 2012 ATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTG 1953
Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937
|| || | ||||| || | || ||||| ||||| |||||| |||||||||| |||
Sbjct 1952 AGGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGAC 1893
Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997
||||| | || |||||||| ||||||||||| || | ||||| |||| |
Sbjct 1892 ATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGC 1833
Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057
| ||||| || || ||||| | |||| || |||| || |||||||| ||||
Sbjct 1832 TCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACG 1773
Query 112058 GCGACCCGCATGAACATGTACTGTGGG 112084
| || ||||| | ||||| ||| |||
Sbjct 1772 GACACACGCATAAGCATGTGCTGCGGG 1746
>seq400
Length=29784
Score = 98.7 bits (108), Expect = 1e-15
Identities = 187/270 (69%), Gaps = 8/270 (3%)
Strand=Plus/Plus
Query 11682 CAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGG 11741
|||||||||| || || | || ||| ||||| ||||||||||| || || | |
Sbjct 15557 CAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGGAAC 15616
Query 11742 CAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800
| ||| || | || ||| ||||| || | ||||| || |||| ||| |||||||||
Sbjct 15617 CGGAG-ACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGGTC 15675
Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA--CTTC 11858
|| || ||||| || ||||| || | |||||| || || |||||||||||| ||||
Sbjct 15676 TTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCAAGCTTC 15735
Query 11859 -CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCC 11917
| | | || || | |||||| || | |||| ||| || || || ||||||
Sbjct 15736 TCGTACTTGGTC---GGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTTGGCC 15792
Query 11918 GCGTCAATCCCCTCAACATCACTGAAGCGG 11947
|||| || || | || || | |||||||
Sbjct 15793 TCGTCCATGCCAGCTACGTCGCGGAAGCGG 15822
>seq1321
Length=24731
Score = 86.0 bits (94), Expect = 8e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736
||||| || || || || || || || |||||| || || |||| ||||| ||||||
Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119
Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
|| | ||| | || || |||||| || ||||||||||| ||||| |||||||||||
Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059
Query 122797 GC 122798
||
Sbjct 19058 GC 19057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628001995771200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |