Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2414 239 6e-58 seq1321 107 2e-18 seq400 98.7 1e-15 seq252 82.4 9e-11 >seq2414 Length=19474 Score = 239 bits (264), Expect = 6e-58 Identities = 683/1039 (66%), Gaps = 27/1039 (3%) Strand=Plus/Minus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || |||||||| || |||||||| || | ||||| || | ||| || || || ||||| Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721 Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646 || ||||| || | || | | ||| ||| | || || |||||||| ||||| Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661 Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 118706 ||||| || || ||||| | | | || || | ||| ||| | |||| | ||| Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601 Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766 || || || || || || || || || | | ||| || | |||||| || || Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATC 2541 Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 || ||||| | ||| || ||| |||||||| | || || || || ||||| | ||| Sbjct 2540 TCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTG 2481 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 || |||||||| |||||| | || || ||||| || || | || ||| ||||| Sbjct 2480 GCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCG 2421 Query 118887 TTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTT 118942 ||| | | || | || | ||| ||| | | ||||| ||||||||| Sbjct 2420 AACCAAAGCTTCTGAGCCTTGA----TGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTT 2365 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 ||| || || ||||| || | | || | || || || || | || Sbjct 2364 CTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGG 2305 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 ||| | ||| | ||| | || || |||| || ||||||||||||||||| |||||||| Sbjct 2304 GCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCA 2245 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAAC 119120 ||| || ||||||| || || || || ||| || | || || || || | Sbjct 2244 GAGGGCGTAGAAGAGGTCACGG--GCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2187 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---- 119176 || | ||||| | || || |||||||| || || ||||| | || | | || Sbjct 2186 TCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGG 2127 Query 119177 --CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 ||| | | || |||||| || || | |||||||| | | |||| ||||| Sbjct 2126 CGCTT--GTTG-CCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATG 2070 Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGA 119292 |||| |||||| | ||| | || || || || ||| ||||| | | |||| | || Sbjct 2069 GGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCACGGA 2012 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | ||||||||| | ||||||||| || || ||| ||||| || ||||| | ||| Sbjct 2011 TGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGA 1952 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 | || ||||||| ||||| |||||||| |||| | |||| |||||||| |||| Sbjct 1951 GGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACA 1892 Query 119413 TTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 | |||| | || || ||||||||||||||||| || || | |||||| |||| | Sbjct 1891 TCTGAG-CGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGC 1833 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 | ||||| || |||||||| | ||| | |||| || ||||| ||||||| Sbjct 1832 TCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACG 1773 Query 119532 GAGACCCGCATAAACATGT 119550 || || ||||||| ||||| Sbjct 1772 GACACACGCATAAGCATGT 1754 >seq1321 Length=24731 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || |||||||| || || |||||| || || |||| ||||| |||||| Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || || |||||||| ||||||||||| ||||| |||||||| || Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059 Query 130154 GCAAAGAGACGC 130165 || | |||||| Sbjct 19058 GCGATCAGACGC 19047 >seq400 Length=29784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATA-CATGGTTGATTTTCACGGGCAA 14291 |||||||| |||||| || || |||||||| ||||| || || | | ||| | | Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTCCTAGCCTG 15554 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | |||||| ||| ||||| | | || ||||||||| ||||||||||| || || | || Sbjct 15555 CG-CAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613 Query 14352 CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 |||| || ||||||||| || | ||||| || |||| ||| ||||||| Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 |||| || || || || || | || | ||| || || || ||| |||||||| Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729 >seq252 Length=28045 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 179178 TTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAA-CTGCGCCACCTTCA 179236 ||||||||| ||||| |||| || || | ||| || || |||| ||| || ||||| | Sbjct 6066 TTCACCGTGGTGGTAGGCCGTGTTCTCGGACACGTAA-CCACCAAGCTGTGCGACCTTAA 6124 Query 179237 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGA 179296 |||| | ||||||||| | |||||| | ||||| ||||| | || |||||| | Sbjct 6125 TCTCCTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTA 6184 Query 179297 GGCCGTCGGCCA 179308 |||||||||||| Sbjct 6185 GGCCGTCGGCCA 6196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618405654258320