Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 239 6e-58
seq1321 107 2e-18
seq400 98.7 1e-15
seq252 82.4 9e-11
>seq2414
Length=19474
Score = 239 bits (264), Expect = 6e-58
Identities = 683/1039 (66%), Gaps = 27/1039 (3%)
Strand=Plus/Minus
Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586
|| |||||||| || |||||||| || | ||||| || | ||| || || || |||||
Sbjct 2780 TCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCC 2721
Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646
|| ||||| || | || | | ||| ||| | || || |||||||| |||||
Sbjct 2720 TCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 2661
Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 118706
||||| || || ||||| | | | || || | ||| ||| | |||| | |||
Sbjct 2660 GTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGGGA 2601
Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766
|| || || || || || || || || | | ||| || | |||||| || ||
Sbjct 2600 AGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATC 2541
Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826
|| ||||| | ||| || ||| |||||||| | || || || || ||||| | |||
Sbjct 2540 TCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTG 2481
Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886
|| |||||||| |||||| | || || ||||| || || | || ||| |||||
Sbjct 2480 GCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCG 2421
Query 118887 TTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTT 118942
||| | | || | || | ||| ||| | | ||||| |||||||||
Sbjct 2420 AACCAAAGCTTCTGAGCCTTGA----TGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTT 2365
Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002
||| || || ||||| || | | || | || || || || | ||
Sbjct 2364 CTCGTAAAGCTGCTCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGG 2305
Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062
||| | ||| | ||| | || || |||| || ||||||||||||||||| ||||||||
Sbjct 2304 GCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCA 2245
Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAAC 119120
||| || ||||||| || || || || ||| || | || || || || |
Sbjct 2244 GAGGGCGTAGAAGAGGTCACGG--GCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2187
Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---- 119176
|| | ||||| | || || |||||||| || || ||||| | || | | ||
Sbjct 2186 TCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGG 2127
Query 119177 --CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234
||| | | || |||||| || || | |||||||| | | |||| |||||
Sbjct 2126 CGCTT--GTTG-CCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATG 2070
Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGA 119292
|||| |||||| | ||| | || || || || ||| ||||| | | |||| | ||
Sbjct 2069 GGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCACGGA 2012
Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352
| ||||||||| | ||||||||| || || ||| ||||| || ||||| | |||
Sbjct 2011 TGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGA 1952
Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412
| || ||||||| ||||| |||||||| |||| | |||| |||||||| ||||
Sbjct 1951 GGGTGTCGTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACA 1892
Query 119413 TTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471
| |||| | || || ||||||||||||||||| || || | |||||| |||| |
Sbjct 1891 TCTGAG-CGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGC 1833
Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531
| ||||| || |||||||| | ||| | |||| || ||||| |||||||
Sbjct 1832 TCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACG 1773
Query 119532 GAGACCCGCATAAACATGT 119550
|| || ||||||| |||||
Sbjct 1772 GACACACGCATAAGCATGT 1754
>seq1321
Length=24731
Score = 107 bits (118), Expect = 2e-18
Identities = 103/132 (78%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
|||||||| || |||||||| || || |||||| || || |||| ||||| ||||||
Sbjct 19178 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGCGCATCAGACCACGCTTC 19119
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
|| | |||||| || || |||||||| ||||||||||| ||||| |||||||| ||
Sbjct 19118 TTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAGAAGATGCCCTCAACACACGCAAAG 19059
Query 130154 GCAAAGAGACGC 130165
|| | ||||||
Sbjct 19058 GCGATCAGACGC 19047
>seq400
Length=29784
Score = 98.7 bits (108), Expect = 1e-15
Identities = 165/236 (70%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATA-CATGGTTGATTTTCACGGGCAA 14291
|||||||| |||||| || || |||||||| ||||| || || | | ||| | |
Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTCCTAGCCTG 15554
Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351
| |||||| ||| ||||| | | || ||||||||| ||||||||||| || || | ||
Sbjct 15555 CG-CAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613
Query 14352 CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411
|||| || ||||||||| || | ||||| || |||| ||| |||||||
Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673
Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467
|||| || || || || || | || | ||| || || || ||| ||||||||
Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729
>seq252
Length=28045
Score = 82.4 bits (90), Expect = 9e-11
Identities = 99/132 (75%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 179178 TTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAA-CTGCGCCACCTTCA 179236
||||||||| ||||| |||| || || | ||| || || |||| ||| || ||||| |
Sbjct 6066 TTCACCGTGGTGGTAGGCCGTGTTCTCGGACACGTAA-CCACCAAGCTGTGCGACCTTAA 6124
Query 179237 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGA 179296
|||| | ||||||||| | |||||| | ||||| ||||| | || |||||| |
Sbjct 6125 TCTCCTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTA 6184
Query 179297 GGCCGTCGGCCA 179308
||||||||||||
Sbjct 6185 GGCCGTCGGCCA 6196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618405654258320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |