Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2414 203 4e-47 seq1321 125 8e-24 seq400 113 5e-20 seq2988 102 1e-16 seq252 95.1 1e-14 >seq2414 Length=19474 Score = 203 bits (224), Expect = 4e-47 Identities = 677/1044 (65%), Gaps = 21/1044 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| | ||||| ||| || ||||||| || || || |||| || ||| Sbjct 1746 CCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGACCGTGT 1805 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | ||||| || || ||||| | | |||| ||||| | || |||||||| Sbjct 1806 CATCGAGACCTATAACCTCATGTCGGAGCGCTACTTCACCCACGCTTCGCCTACCCTCTT 1865 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| |||||||| || | || ||||| |||||||||| |||||| ||||| || Sbjct 1866 CAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACGA 1925 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | || ||||| | || || | | || || || ||||| ||| || || Sbjct 1926 CTCGATTGATGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGG 1985 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACA 104518 |||||||| | |||||||| | | | |||| | ||||| ||| || || Sbjct 1986 CGGTATTGGTCTCCACATCCACAACATCCGTGCCA--AGGGCTCGTACATTGCCGGTACC 2043 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| | || | ||||| |||| ||||| || | | | ||||| || || || Sbjct 2044 AACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTAC 2103 Query 104579 GTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATG 104631 | || | | ||||| | | ||| || | | || |||| || ||||| || Sbjct 2104 G----TCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTG 2159 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| || || | || ||||| || | || ||||| || | |||||| ||| Sbjct 2160 GCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCG 2219 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| || ||||||| ||| |||||||| || || |||||||||||| | || |||| Sbjct 2220 TGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGC 2279 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 | ||| | ||| | ||| | || || | | || || || || |||| | | Sbjct 2280 GGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACTC 2339 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 |||||||| || |||||| |||||||| || ||| | | | | || ||| Sbjct 2340 GGAGGAGTTCGAGCAGCTTTACGAGAAGTACGA-GAGCGAGGGCAAGGGTC-GCAAGACC 2397 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | || | || | | ||| ||||| ||| || |||| || ||||||||| || Sbjct 2398 AT-CAAGGCTCAGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTCC 2456 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||| ||||| |||||| ||| ||| || || || | | || || Sbjct 2457 CTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCAT 2516 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 |||| ||||| ||||| || || ||| | || | | || ||| || || Sbjct 2517 CAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTGACGAGGTCGCCGT 2576 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 || ||||| || || || ||||| ||| | ||| || ||| | |||| | || Sbjct 2577 CTGCAACCTTGCCTCGATTGCTCTTCCCGCCTTTGTCGACTTTGAGGCTCAGACTTACGA 2636 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | || || ||||| | || || |||||||| ||||| || || || Sbjct 2637 CTTCAAGAAGCTGCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCATCAC 2696 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | | || | |||||||| || ||||| || || || ||| | ||||| || | || Sbjct 2697 TCGCAACTACTACCCCGTCAAGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCGTCGG 2756 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGA 105252 ||||||||||||||||||||| || Sbjct 2757 TCTCGGTGTTCAGGGTCTCGCCGA 2780 >seq1321 Length=24731 Score = 125 bits (138), Expect = 8e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865 ||| || |||| ||||||||||||||||| ||||||||||| || || ||| || || Sbjct 19047 GCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCAT 19106 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 | |||||||||||||| ||||| |||| || ||| ||||||||||||||| ||||| Sbjct 19107 CTTCTGGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTC 19166 Query 94926 TCGTGACGAGGG 94937 || |||||||| Sbjct 19167 GCGCGACGAGGG 19178 >seq400 Length=29784 Score = 113 bits (124), Expect = 5e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATG-CATGGTTGATTTTCGCGAGCGA 9752 ||| || | ||| || ||||| || |||||||||||| || || | | ||| | ||| Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTC-CTAGCCT 15553 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 |||||||||| || |||||| || || ||||| ||||||||||| || || | | Sbjct 15554 GCGCAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613 Query 9813 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 |||| || ||||||||| || | ||||| || |||| ||| || || | Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||||||| ||||| || ||||| |||| ||| || || ||||||||||| ||| Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729 >seq2988 Length=9850 Score = 102 bits (112), Expect = 1e-16 Identities = 323/498 (65%), Gaps = 2/498 (0%) Strand=Plus/Plus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 |||| ||||||||||| || | || || | ||||| || || | ||||||| |||| Sbjct 1897 AACCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGT 1956 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | || ||||| ||| | | || || || | | ||| | |||| || || || | Sbjct 1957 ACTCGGGCTCGATGCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCGG 2016 Query 168396 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 168454 ||| || | |||| |||| | | || || || || || | || | Sbjct 2017 GATGGAACACAGCGCGGGTCATCGCGGACGTG-TTGGTGAAAATGTAACGCGCGCTGGCA 2075 Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 || ||||| |||||| | ||||||||| |||||||| ||||| || | ||||| Sbjct 2076 GCGTCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 2135 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574 ||||| |||| | | | || | |||||| || | | ||| ||| Sbjct 2136 TTGTTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGCAGTCAGACTCTGTTCG 2195 Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 168634 |||||||||||||| | ||||| | || | | | | |||||| || || ||||| Sbjct 2196 CCGTGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGATCTCC 2255 Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694 | ||||||||| | |||||| ||||||| |||||||| || |||||||| || Sbjct 2256 TTCTTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGAGGCCG 2315 Query 168695 TCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTG 168754 || || | || ||| |||||| | ||| |||| |||| || || |||||| Sbjct 2316 TCGGCAACCGATGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAGGATCAGCTCCTTG 2375 Query 168755 TGTACAAAGTTTGAGATG 168772 | ||||||| |||||| Sbjct 2376 TTGACAAAGTCCGAGATG 2393 >seq252 Length=28045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 323/498 (65%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 |||| ||||| ||||| || | |||||| | ||||| ||| || | || |||| |||| Sbjct 5771 AACCGGTACCAATACCGTCCGCACCGTTGATGAGAATCATCGGAACAGTCGGCAAGTAGT 5830 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | || ||||| || | | || || ||| | | ||| | |||| ||| || || | Sbjct 5831 ACTCGGGCTCGATACGCTGGCCGTCCTCAACAAGGTAGGTAAGAAGTGGGTCGTCCGCTG 5890 Query 168396 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 168454 | | || | |||| |||| | | || || || || || | | | Sbjct 5891 GGTGGAACACAGCGCGGGTCATCGCGGAGGTG-TTGGTGAAAATGTAACGAGCGCTGGCA 5949 Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 || ||||| || ||| | ||||||||| |||||||| ||||| || | ||||| Sbjct 5950 GCGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 6009 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574 ||||| || | | | | ||||| || |||||| ||| | | |||| Sbjct 6010 TTGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCA 6069 Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTC 168633 ||||||||||| || | ||||| | || | || |||| ||| || || || ||||| Sbjct 6070 CCGTGGTGGTAGGCCGTGTTCTCGGACACGTA-ACCACCAAGCTGTGCGACCTTAATCTC 6128 Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693 | |||||| || | |||||| |||||||||||||||| || |||||| || || Sbjct 6129 CTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTAGGCC 6188 Query 168694 ATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTT 168753 || |||| | || |||||| | |||||||| |||| | ||| ||||| Sbjct 6189 GTCGGCCACCGAGGGAATGGAACGCATGTTGTCCGCCATCGAGAAGAGAATGAGCTCCTT 6248 Query 168754 GTGTACAAAGTTTGAGAT 168771 || || |||| ||||| Sbjct 6249 GTTGACGAAGTCAGAGAT 6266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583232934715280