Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 203 4e-47
seq1321 125 8e-24
seq400 113 5e-20
seq2988 102 1e-16
seq252 95.1 1e-14
>seq2414
Length=19474
Score = 203 bits (224), Expect = 4e-47
Identities = 677/1044 (65%), Gaps = 21/1044 (2%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| ||||| | ||||| ||| || ||||||| || || || |||| || |||
Sbjct 1746 CCCGCAGCACATGCTTATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGACCGTGT 1805
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| | ||||| || || ||||| | | |||| ||||| | || ||||||||
Sbjct 1806 CATCGAGACCTATAACCTCATGTCGGAGCGCTACTTCACCCACGCTTCGCCTACCCTCTT 1865
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
||| |||||||| || | || ||||| |||||||||| |||||| ||||| ||
Sbjct 1866 CAACGCTGGTACTCCTCACGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACGA 1925
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
||| || | || ||||| | || || | | || || || ||||| ||| || ||
Sbjct 1926 CTCGATTGATGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGG 1985
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACA 104518
|||||||| | |||||||| | | | |||| | ||||| ||| || ||
Sbjct 1986 CGGTATTGGTCTCCACATCCACAACATCCGTGCCA--AGGGCTCGTACATTGCCGGTACC 2043
Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578
|| ||| | || | ||||| |||| ||||| || | | | ||||| || || ||
Sbjct 2044 AACGGTTACTCCAACGGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTAC 2103
Query 104579 GTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATG 104631
| || | | ||||| | | ||| || | | || |||| || ||||| ||
Sbjct 2104 G----TCGACCAGGGCGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTG 2159
Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691
|||||| || || | || ||||| || | || ||||| || | |||||| |||
Sbjct 2160 GCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCG 2219
Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751
||| || ||||||| ||| |||||||| || || |||||||||||| | || ||||
Sbjct 2220 TGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGC 2279
Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811
| ||| | ||| | ||| | || || | | || || || || |||| | |
Sbjct 2280 GGACGGCGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACTC 2339
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869
|||||||| || |||||| |||||||| || ||| | | | | || |||
Sbjct 2340 GGAGGAGTTCGAGCAGCTTTACGAGAAGTACGA-GAGCGAGGGCAAGGGTC-GCAAGACC 2397
Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
| | || | || | | ||| ||||| ||| || |||| || ||||||||| ||
Sbjct 2398 AT-CAAGGCTCAGAAGCTTTGGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTCC 2456
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
| |||||| ||||| |||||| ||| ||| || || || | | || ||
Sbjct 2457 CTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCAT 2516
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
|||| ||||| ||||| || || ||| | || | | || ||| || ||
Sbjct 2517 CAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCGTCGCCTGACGAGGTCGCCGT 2576
Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108
|| ||||| || || || ||||| ||| | ||| || ||| | |||| | ||
Sbjct 2577 CTGCAACCTTGCCTCGATTGCTCTTCCCGCCTTTGTCGACTTTGAGGCTCAGACTTACGA 2636
Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168
| | || || ||||| | || || |||||||| ||||| || || ||
Sbjct 2637 CTTCAAGAAGCTGCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCATCAC 2696
Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228
| | || | |||||||| || ||||| || || || ||| | ||||| || | ||
Sbjct 2697 TCGCAACTACTACCCCGTCAAGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCGTCGG 2756
Query 105229 TCTCGGTGTTCAGGGTCTCGCGGA 105252
||||||||||||||||||||| ||
Sbjct 2757 TCTCGGTGTTCAGGGTCTCGCCGA 2780
>seq1321
Length=24731
Score = 125 bits (138), Expect = 8e-24
Identities = 107/132 (81%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865
||| || |||| ||||||||||||||||| ||||||||||| || || ||| || ||
Sbjct 19047 GCGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCAT 19106
Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925
| |||||||||||||| ||||| |||| || ||| ||||||||||||||| |||||
Sbjct 19107 CTTCTGGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTC 19166
Query 94926 TCGTGACGAGGG 94937
|| ||||||||
Sbjct 19167 GCGCGACGAGGG 19178
>seq400
Length=29784
Score = 113 bits (124), Expect = 5e-20
Identities = 168/236 (71%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATG-CATGGTTGATTTTCGCGAGCGA 9752
||| || | ||| || ||||| || |||||||||||| || || | | ||| | |||
Sbjct 15495 CTTACCGATGGCGTCGATCTCGTCGATGAAGACGATGGCAGGGGCGTTCTTC-CTAGCCT 15553
Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812
|||||||||| || |||||| || || ||||| ||||||||||| || || | |
Sbjct 15554 GCGCAAAGAGATCACGCACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGG 15613
Query 9813 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872
|||| || ||||||||| || | ||||| || |||| ||| || || |
Sbjct 15614 AACCGGAGACGGAGAAGAAGGGGACCTTGGCCTCACCGGCCGTGGCCTTGGCAAGGAGGG 15673
Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928
||||||| ||||| || ||||| |||| ||| || || ||||||||||| |||
Sbjct 15674 TCTTACCAGTACCGGGAGGACCCGAAAGGATGGCGCCGCGAGGAATCTTGGCACCA 15729
>seq2988
Length=9850
Score = 102 bits (112), Expect = 1e-16
Identities = 323/498 (65%), Gaps = 2/498 (0%)
Strand=Plus/Plus
Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335
|||| ||||||||||| || | || || | ||||| || || | ||||||| ||||
Sbjct 1897 AACCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGT 1956
Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395
| || ||||| ||| | | || || || | | ||| | |||| || || || |
Sbjct 1957 ACTCGGGCTCGATGCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCGG 2016
Query 168396 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 168454
||| || | |||| |||| | | || || || || || | || |
Sbjct 2017 GATGGAACACAGCGCGGGTCATCGCGGACGTG-TTGGTGAAAATGTAACGCGCGCTGGCA 2075
Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514
|| ||||| |||||| | ||||||||| |||||||| ||||| || | |||||
Sbjct 2076 GCGTCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 2135
Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574
||||| |||| | | | || | |||||| || | | ||| |||
Sbjct 2136 TTGTTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGCAGTCAGACTCTGTTCG 2195
Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 168634
|||||||||||||| | ||||| | || | | | | |||||| || || |||||
Sbjct 2196 CCGTGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGATCTCC 2255
Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694
| ||||||||| | |||||| ||||||| |||||||| || |||||||| ||
Sbjct 2256 TTCTTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGAGGCCG 2315
Query 168695 TCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTG 168754
|| || | || ||| |||||| | ||| |||| |||| || || ||||||
Sbjct 2316 TCGGCAACCGATGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAGGATCAGCTCCTTG 2375
Query 168755 TGTACAAAGTTTGAGATG 168772
| ||||||| ||||||
Sbjct 2376 TTGACAAAGTCCGAGATG 2393
>seq252
Length=28045
Score = 95.1 bits (104), Expect = 1e-14
Identities = 323/498 (65%), Gaps = 4/498 (1%)
Strand=Plus/Plus
Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335
|||| ||||| ||||| || | |||||| | ||||| ||| || | || |||| ||||
Sbjct 5771 AACCGGTACCAATACCGTCCGCACCGTTGATGAGAATCATCGGAACAGTCGGCAAGTAGT 5830
Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395
| || ||||| || | | || || ||| | | ||| | |||| ||| || || |
Sbjct 5831 ACTCGGGCTCGATACGCTGGCCGTCCTCAACAAGGTAGGTAAGAAGTGGGTCGTCCGCTG 5890
Query 168396 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 168454
| | || | |||| |||| | | || || || || || | | |
Sbjct 5891 GGTGGAACACAGCGCGGGTCATCGCGGAGGTG-TTGGTGAAAATGTAACGAGCGCTGGCA 5949
Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514
|| ||||| || ||| | ||||||||| |||||||| ||||| || | |||||
Sbjct 5950 GCGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATG 6009
Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574
||||| || | | | | ||||| || |||||| ||| | | ||||
Sbjct 6010 TTGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCA 6069
Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTC 168633
||||||||||| || | ||||| | || | || |||| ||| || || || |||||
Sbjct 6070 CCGTGGTGGTAGGCCGTGTTCTCGGACACGTA-ACCACCAAGCTGTGCGACCTTAATCTC 6128
Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693
| |||||| || | |||||| |||||||||||||||| || |||||| || ||
Sbjct 6129 CTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTAGGCC 6188
Query 168694 ATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTT 168753
|| |||| | || |||||| | |||||||| |||| | ||| |||||
Sbjct 6189 GTCGGCCACCGAGGGAATGGAACGCATGTTGTCCGCCATCGAGAAGAGAATGAGCTCCTT 6248
Query 168754 GTGTACAAAGTTTGAGAT 168771
|| || |||| |||||
Sbjct 6249 GTTGACGAAGTCAGAGAT 6266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583232934715280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |